SCOPe 2.08: Domain d1oyza_: 1oyz A:

Lineage for d1oyza_ (1oyz A:)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.118: alpha-alpha superhelix [48370] (28 superfamilies)
   multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix

4. Superfamily a.118.1: ARM repeat [48371] (28 families)

5. Family a.118.1.16: PBS lyase HEAT-like repeat [101410] (2 proteins)
   Pfam PF03130
   this is a repeat family; one repeat unit is 1oyz A:122-155 found in domain

6. Protein Hypothetical protein YibA [101411] (1 species)

7. Species Escherichia coli [TaxId:562] [101412] (1 PDB entry)

8. Domain d1oyza_: 1oyz A: [93775]
   applies to all domains of a family if the common domain is composed of a different number of small repeating units

Details for d1oyza_

PDB Entry: 1oyz, 2.1 Å

PDB Description: x-ray structure of yiba_ecoli northeast structural genomics consortium target et31.

PDB Compounds: (A:) Hypothetical protein yibA

SCOPe Domain Sequences for d1oyza_:

Sequence, based on SEQRES records:

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}
yqkrkaskeyglynqckklnddelfrllddhnslkrissarvlqlrggqdavrlaiefcs
dknyirrdigafilgqikickkcednvfnilnnmalndksacvrataiestaqrckknpi
yspkiveqsqitafdkstnvrratafaisvindkatipllinllkdpngdvrnwaafain
inkydnsdirdcfvemlqdkneevrieaiiglsyrkdkrvlsvlcdelkkntvyddiiea
agelgdktllpvldtmlykfddneiitsaidklkrs

Sequence, based on observed residues (ATOM records):

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}
yqkrkaskeyglynqckklnddelfrllddhnslkrissarvlqlrggqdavrlaiefcs
dknyirrdigafilgqikickkcednvfnilnnmalndksacvrataiestaqrckknpi
yspkiveqsqitafdkstnvrratafaisviatipllinllkdpngdvrnwaafainink
ydnsdirdcfvemlqdkneevrieaiiglsyrkdkrvlsvlcdelkkntvyddiieaage
lgdktllpvldtmlykfddneiitsaidklkrs

Timeline for d1oyza_:

• d1oyza_ first appeared in SCOP 1.67
  
• d1oyza_ appears in SCOPe 2.07