SCOP 1.75: Domain d1ogyo2: 1ogy O:12-681

Lineage for d1ogyo2 (1ogy O:12-681)

1. Root: SCOP 1.75

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.81: Formate dehydrogenase/DMSO reductase, domains 1-3 [53705] (1 superfamily)
   contains of two similar intertwined domains related by pseudo dyad; duplication
   core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32451

4. Superfamily c.81.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53706] (1 family)
   molybdopterine enzyme

5. Family c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53707] (10 proteins)
   domain 1 (residues 1-55) binds Fe4S4 cluster in FDH but not DMSO reductase

6. Protein Periplasmic nitrate reductase alpha chain [53717] (2 species)

7. Species Rhodobacter sphaeroides [TaxId:1063] [102672] (1 PDB entry)

8. Domain d1ogyo2: 1ogy O:12-681 [92974]
   Other proteins in same PDB: d1ogya1, d1ogyb_, d1ogyc1, d1ogyd_, d1ogye1, d1ogyf_, d1ogyg1, d1ogyh_, d1ogyi1, d1ogyj_, d1ogyk1, d1ogyl_, d1ogym1, d1ogyn_, d1ogyo1, d1ogyp_
   complexed with hec, mgd, mo, sf4

Details for d1ogyo2

PDB Entry: 1ogy, 3.2 Å

PDB Description: crystal structure of the heterodimeric nitrate reductase from rhodobacter sphaeroides

PDB Compounds: (O:) periplasmic nitrate reductase

SCOP Domain Sequences for d1ogyo2:

Sequence; same for both SEQRES and ATOM records:

>d1ogyo2 c.81.1.1 (O:12-681) Periplasmic nitrate reductase alpha chain {Rhodobacter sphaeroides [TaxId: 1063]}
irwskapcrfcgtgcgvmvgtrdgqvvathgdtqaevnrglncvkgyflskimygedrlt
tpllrmkdgvyhkegefapvswdeafdvmaaqaklvlkekapeavgmfgsgqwtiwegya
asklmragfrsnnldpnarhcmasaatafmrtfgmdepmgcyddfeaadafvlwgsnmae
mhpilwsrltdrrlshehvrvavlstfthrssdlsdtpiifrpgtdrailnyiahhiist
grvnrdfvdrhtnfalgatdigyglrpehqlqlaakgaadagamtptdfetfaalvseyt
lekaaeisgvepalleelaelyadpdrkwmslwtmgfnqhvrgvwanhmvynlhlltgki
sepgnspfsltgqpfacgtarevgtfahrlpadmvvtnpehrahaeeiwklpagllpdwv
gahaveqdrklhdgeinfywvqvnnnmqaapnidqetypgyrnpenfivvsdayptvtgr
aadlvlpaamwvekegaygnaerrthfwhqlveapgearsdlwqlmefskrfttdevwpe
eilsaapayrgktlfevlfangsvdrfpasdvnpdhanheaalfgfypqkglfeeyaafg
rghghdlapfdtyhevrglhwpvvegeetrwryregfdpyvkpgeglrfygkpdgravil
gvpyeppaes

Timeline for d1ogyo2:

• d1ogyo2 first appeared in SCOP 1.67
  
• d1ogyo2 appears in SCOP 1.73
  
• d1ogyo2 appears in SCOPe 2.01
  
• d1ogyo2 appears in the current release, SCOPe 2.08