SCOP 1.75: Protein: Periplasmic nitrate reductase alpha chain

Lineage for Protein: Periplasmic nitrate reductase alpha chain

Root: SCOP 1.75
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

Fold c.81: Formate dehydrogenase/DMSO reductase, domains 1-3 [53705] (1 superfamily)
contains of two similar intertwined domains related by pseudo dyad; duplication
core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32451

Superfamily c.81.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53706] (1 family)
molybdopterine enzyme
Family c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53707] (10 proteins)
domain 1 (residues 1-55) binds Fe4S4 cluster in FDH but not DMSO reductase
Protein Periplasmic nitrate reductase alpha chain [53717] (2 species)

Species:

Desulfovibrio desulfuricans [TaxId:876] [53718] (8 PDB entries)
dissimilatory nitrate reductase (NAP)
1. Domain for 2jim:
  - Domain d2jima2: 2jim A:4-600 [148092]
    Other proteins in same PDB: d2jima1
    automatically matched to d2napa2
    complexed with mgd, mo, s, sf4
2. Domain for 2jio:
  - Domain d2jioa2: 2jio A:4-600 [148094]
    Other proteins in same PDB: d2jioa1
    automatically matched to d2napa2
    complexed with mgd, mo, s, sf4
3. Domain for 2jip:
  - Domain d2jipa2: 2jip A:4-600 [148096]
    Other proteins in same PDB: d2jipa1
    automatically matched to d2napa2
    complexed with mgd, mo, s, sf4
4. Domain for 2jiq:
  - Domain d2jiqa2: 2jiq A:4-600 [148098]
    Other proteins in same PDB: d2jiqa1
    automatically matched to d2napa2
    complexed with mgd, mo, no2, no3, s, sf4
5. Domain for 2jir:
  - Domain d2jira2: 2jir A:4-600 [148100]
    Other proteins in same PDB: d2jira1
    automatically matched to d2napa2
    complexed with cyn, mgd, mo, no2, sf4
6. Domain for 2nap:
  - Domain d2napa2: 2nap A:4-600 [35334]
    Other proteins in same PDB: d2napa1
    complexed with fs4, mes, mgd, mo
7. Domain for 2v3v:
  - Domain d2v3va2: 2v3v A:4-600 [152464]
    Other proteins in same PDB: d2v3va1
    automatically matched to d2napa2
    complexed with lcp, mgd, mo, s, sf4
8. Domain for 2v45:
  - Domain d2v45a2: 2v45 A:4-600 [152484]
    Other proteins in same PDB: d2v45a1
    automatically matched to d2napa2
    complexed with lcp, mgd, mo, s, sf4

Rhodobacter sphaeroides [TaxId:1063] [102672] (1 PDB entry)

Domains for 1ogy:

Domain d1ogya2: 1ogy A:12-681 [92953]
Other proteins in same PDB: d1ogya1, d1ogyb_, d1ogyc1, d1ogyd_, d1ogye1, d1ogyf_, d1ogyg1, d1ogyh_, d1ogyi1, d1ogyj_, d1ogyk1, d1ogyl_, d1ogym1, d1ogyn_, d1ogyo1, d1ogyp_

Domain d1ogyc2: 1ogy C:12-681 [92956]
Other proteins in same PDB: d1ogya1, d1ogyb_, d1ogyc1, d1ogyd_, d1ogye1, d1ogyf_, d1ogyg1, d1ogyh_, d1ogyi1, d1ogyj_, d1ogyk1, d1ogyl_, d1ogym1, d1ogyn_, d1ogyo1, d1ogyp_

Domain d1ogye2: 1ogy E:12-681 [92959]
Other proteins in same PDB: d1ogya1, d1ogyb_, d1ogyc1, d1ogyd_, d1ogye1, d1ogyf_, d1ogyg1, d1ogyh_, d1ogyi1, d1ogyj_, d1ogyk1, d1ogyl_, d1ogym1, d1ogyn_, d1ogyo1, d1ogyp_

Domain d1ogyg2: 1ogy G:12-681 [92962]
Other proteins in same PDB: d1ogya1, d1ogyb_, d1ogyc1, d1ogyd_, d1ogye1, d1ogyf_, d1ogyg1, d1ogyh_, d1ogyi1, d1ogyj_, d1ogyk1, d1ogyl_, d1ogym1, d1ogyn_, d1ogyo1, d1ogyp_

Domain d1ogyi2: 1ogy I:12-681 [92965]
Other proteins in same PDB: d1ogya1, d1ogyb_, d1ogyc1, d1ogyd_, d1ogye1, d1ogyf_, d1ogyg1, d1ogyh_, d1ogyi1, d1ogyj_, d1ogyk1, d1ogyl_, d1ogym1, d1ogyn_, d1ogyo1, d1ogyp_

Domain d1ogyk2: 1ogy K:12-681 [92968]
Other proteins in same PDB: d1ogya1, d1ogyb_, d1ogyc1, d1ogyd_, d1ogye1, d1ogyf_, d1ogyg1, d1ogyh_, d1ogyi1, d1ogyj_, d1ogyk1, d1ogyl_, d1ogym1, d1ogyn_, d1ogyo1, d1ogyp_

Domain d1ogym2: 1ogy M:12-681 [92971]
Other proteins in same PDB: d1ogya1, d1ogyb_, d1ogyc1, d1ogyd_, d1ogye1, d1ogyf_, d1ogyg1, d1ogyh_, d1ogyi1, d1ogyj_, d1ogyk1, d1ogyl_, d1ogym1, d1ogyn_, d1ogyo1, d1ogyp_

Domain d1ogyo2: 1ogy O:12-681 [92974]
Other proteins in same PDB: d1ogya1, d1ogyb_, d1ogyc1, d1ogyd_, d1ogye1, d1ogyf_, d1ogyg1, d1ogyh_, d1ogyi1, d1ogyj_, d1ogyk1, d1ogyl_, d1ogym1, d1ogyn_, d1ogyo1, d1ogyp_
complexed with hec, mgd, mo, sf4

More info for Protein Periplasmic nitrate reductase alpha chain from c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3

Timeline for Protein Periplasmic nitrate reductase alpha chain from c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3:

Protein Periplasmic nitrate reductase alpha chain from c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 first appeared (with stable ids) in SCOP 1.55, called Protein Dissimilatory nitrate reductase (NAP) from c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3
Protein Periplasmic nitrate reductase alpha chain from c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 appears in SCOP 1.73
Protein Periplasmic nitrate reductase alpha chain from c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 appears in SCOPe 2.01
Protein Periplasmic nitrate reductase alpha chain from c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 appears in the current release, SCOPe 2.08