Lineage for d1oop.1 (1oop D:,B:)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2409884Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2410108Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2410109Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 protein domains)
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. 2410377Protein Swine vesicular disease virus coat proteins [89225] (1 species)
  7. 2410378Species Swine vesicular disease virus [TaxId:12075] [89226] (2 PDB entries)
  8. 2410382Domain d1oop.1: 1oop D:,B: [87203]
    complexed with myr, sph

Details for d1oop.1

PDB Entry: 1oop (more details), 3 Å

PDB Description: the crystal structure of swine vesicular disease virus
PDB Compounds: (B:) coat protein vp2, (D:) coat protein vp4

SCOPe Domain Sequences for d1oop.1:

Sequence, based on SEQRES records: (download)

>g1oop.1 b.121.4.1 (D:,B:) Swine vesicular disease virus coat proteins {Swine vesicular disease virus [TaxId: 12075]}

Sequence, based on observed residues (ATOM records): (download)

>g1oop.1 b.121.4.1 (D:,B:) Swine vesicular disease virus coat proteins {Swine vesicular disease virus [TaxId: 12075]}

SCOPe Domain Coordinates for d1oop.1:

Click to download the PDB-style file with coordinates for d1oop.1.
(The format of our PDB-style files is described here.)

Timeline for d1oop.1: