SCOPe 2.05: Domain d1omia2: 1omi A:1138-1237

Lineage for d1omia2 (1omi A:1138-1237)

1. Root: SCOPe 2.05

2. Class a: All alpha proteins [46456] (286 folds)

3. Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
   core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down

4. Superfamily a.4.5: "Winged helix" DNA-binding domain [46785] (85 families)
   contains a small beta-sheet (wing)

5. Family a.4.5.4: CAP C-terminal domain-like [46796] (9 proteins)

6. Protein Listeriolysin regulatory protein PrfA, C-terminal domain [88975] (1 species)
7. Species Listeria monocytogenes [TaxId:1639] [88976] (1 PDB entry)

8. Domain d1omia2: 1omi A:1138-1237 [87080]
   Other proteins in same PDB: d1omia1, d1omib1
   complexed with gol

Details for d1omia2

PDB Entry: 1omi, 2.8 Å

PDB Description: crystal structure of prfa,the transcriptional regulator in listeria monocytogenes

PDB Compounds: (A:) listeriolysin regulatory protein

SCOPe Domain Sequences for d1omia2:

Sequence, based on SEQRES records:

>d1omia2 a.4.5.4 (A:1138-1237) Listeriolysin regulatory protein PrfA, C-terminal domain {Listeria monocytogenes [TaxId: 1639]}
gklgsicgqlliltyvygketpdgikitldnltmqelgyssgiahssavsriisklkqek
vivyknscfyvqnldylkryapkldewfylacpatwgkln

Sequence, based on observed residues (ATOM records):

>d1omia2 a.4.5.4 (A:1138-1237) Listeriolysin regulatory protein PrfA, C-terminal domain {Listeria monocytogenes [TaxId: 1639]}
gklgsicgqlliltyvygketpdgikitldnltmqelsavsriisklkqekvivyknscf
yvqnldylkryapkldewfylacpatwgkln

Timeline for d1omia2:

• d1omia2 first appeared in SCOP 1.65
  
• d1omia2 appears in SCOPe 2.04
  
• d1omia2 appears in SCOPe 2.06
  
• d1omia2 appears in the current release, SCOPe 2.08