Lineage for d1nkka_ (1nkk A:)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2803993Fold b.57: Herpes virus serine proteinase, assemblin [50788] (1 superfamily)
    core: barrel, closed; n=7, S=8; complex topology
  4. 2803994Superfamily b.57.1: Herpes virus serine proteinase, assemblin [50789] (2 families) (S)
    automatically mapped to Pfam PF00716
  5. 2803995Family b.57.1.1: Herpes virus serine proteinase, assemblin [50790] (5 proteins)
  6. 2804004Protein Human cytomegalovirus protease [50791] (1 species)
  7. 2804005Species Human cytomegalovirus [TaxId:10359] [50792] (15 PDB entries)
  8. 2804026Domain d1nkka_: 1nkk A: [80567]

Details for d1nkka_

PDB Entry: 1nkk (more details), 2.6 Å

PDB Description: complex structure of hcmv protease and a peptidomimetic inhibitor
PDB Compounds: (A:) Capsid protein P40

SCOPe Domain Sequences for d1nkka_:

Sequence, based on SEQRES records: (download)

>d1nkka_ b.57.1.1 (A:) Human cytomegalovirus protease {Human cytomegalovirus [TaxId: 10359]}
deqqsqavapvyvggflarydqspdearlllprdvvehwlhaqgqgqpslsvalplninh
ddtavvghvaamqsvrdglfclgcvtsprfleivrrasekselvsrgpvsplqpdkvvef
lsgsyaglslssrrcddveqatslsgsettpfkhvalcsvgrrrgtlavygrdpewvtqr
fpdltaadrdglraqwqrcgstavdasgdpfrsdsygllgnsvdalyirerlpklrydkq
lvgvteresyvka

Sequence, based on observed residues (ATOM records): (download)

>d1nkka_ b.57.1.1 (A:) Human cytomegalovirus protease {Human cytomegalovirus [TaxId: 10359]}
deqqsqavapvyvggflarydqspdearlllprdvvehwlhaqvalplninhddtavvgh
vaamqsvrdglfclgcvtsprfleivrrasekselvsrgpvsplqpdkvveflsgsyagl
slssrrttpfkhvalcsvgrrrgtlavygrdpewvtqrfpdltaadrdglraqwqrgdpf
rsdsygllgnsvdalyirerlpklrydkqlvgvteresyvka

SCOPe Domain Coordinates for d1nkka_:

Click to download the PDB-style file with coordinates for d1nkka_.
(The format of our PDB-style files is described here.)

Timeline for d1nkka_: