Lineage for d1nkkd_ (1nkk D:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2062283Fold b.57: Herpes virus serine proteinase, assemblin [50788] (1 superfamily)
    core: barrel, closed; n=7, S=8; complex topology
  4. 2062284Superfamily b.57.1: Herpes virus serine proteinase, assemblin [50789] (2 families) (S)
    automatically mapped to Pfam PF00716
  5. 2062285Family b.57.1.1: Herpes virus serine proteinase, assemblin [50790] (5 protein domains)
  6. 2062294Protein Human cytomegalovirus protease [50791] (1 species)
  7. 2062295Species Human cytomegalovirus [TaxId:10359] [50792] (15 PDB entries)
  8. 2062319Domain d1nkkd_: 1nkk D: [80570]

Details for d1nkkd_

PDB Entry: 1nkk (more details), 2.6 Å

PDB Description: complex structure of hcmv protease and a peptidomimetic inhibitor
PDB Compounds: (D:) Capsid protein P40

SCOPe Domain Sequences for d1nkkd_:

Sequence, based on SEQRES records: (download)

>d1nkkd_ b.57.1.1 (D:) Human cytomegalovirus protease {Human cytomegalovirus [TaxId: 10359]}
deqqsqavapvyvggflarydqspdearlllprdvvehwlhaqgqgqpslsvalplninh
ddtavvghvaamqsvrdglfclgcvtsprfleivrrasekselvsrgpvsplqpdkvvef
lsgsyaglslssrrcddveqatslsgsettpfkhvalcsvgrrrgtlavygrdpewvtqr
fpdltaadrdglraqwqrcgstavdasgdpfrsdsygllgnsvdalyirerlpklrydkq
lvgvteresyvka

Sequence, based on observed residues (ATOM records): (download)

>d1nkkd_ b.57.1.1 (D:) Human cytomegalovirus protease {Human cytomegalovirus [TaxId: 10359]}
deqqsqavapvyvggflarydqspdearlllprdvvehwlhaqvalplninhddtavvgh
vaamqsvrdglfclgcvtsprfleivrrasekselvsrgpvsplqpdkvveflsgsyagl
slssrrtpfkhvalcsvgrrrgtlavygrdpewvtqrfpdltaadrdglraqwqgdpfrs
dsygllgnsvdalyirerlpklrydkqlvgvteresyvka

SCOPe Domain Coordinates for d1nkkd_:

Click to download the PDB-style file with coordinates for d1nkkd_.
(The format of our PDB-style files is described here.)

Timeline for d1nkkd_: