SCOPe 2.08: Domain d1nkkb_: 1nkk B:

Lineage for d1nkkb_ (1nkk B:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.57: Herpes virus serine proteinase, assemblin [50788] (1 superfamily)
   core: barrel, closed; n=7, S=8; complex topology

4. Superfamily b.57.1: Herpes virus serine proteinase, assemblin [50789] (2 families)
   automatically mapped to Pfam PF00716

5. Family b.57.1.1: Herpes virus serine proteinase, assemblin [50790] (5 proteins)

6. Protein Human cytomegalovirus protease [50791] (1 species)

7. Species Human cytomegalovirus [TaxId:10359] [50792] (15 PDB entries)

8. Domain d1nkkb_: 1nkk B: [80568]

Details for d1nkkb_

PDB Entry: 1nkk, 2.6 Å

PDB Description: complex structure of hcmv protease and a peptidomimetic inhibitor

PDB Compounds: (B:) Capsid protein P40

SCOPe Domain Sequences for d1nkkb_:

Sequence, based on SEQRES records:

>d1nkkb_ b.57.1.1 (B:) Human cytomegalovirus protease {Human cytomegalovirus [TaxId: 10359]}
eqqsqavapvyvggflarydqspdearlllprdvvehwlhaqgqgqpslsvalplninhd
dtavvghvaamqsvrdglfclgcvtsprfleivrrasekselvsrgpvsplqpdkvvefl
sgsyaglslssrrcddveqatslsgsettpfkhvalcsvgrrrgtlavygrdpewvtqrf
pdltaadrdglraqwqrcgstavdasgdpfrsdsygllgnsvdalyirerlpklrydkql
vgvteresyvka

Sequence, based on observed residues (ATOM records):

>d1nkkb_ b.57.1.1 (B:) Human cytomegalovirus protease {Human cytomegalovirus [TaxId: 10359]}
eqqsqavapvyvggflarydqspdearlllprdvvehwlhaqvalplninhddtavvghv
aamqsvrdglfclgcvtsprfleivrrasekselvsrgpvsplqpdkvveflsgsyagls
lssrrcdettpfkhvalcsvgrrrgtlavygrdpewvtqrfpdltaadrdglraqwqrcg
gdpfrsdsygllgnsvdalyirerlpklrydkqlvgvteresyvka

Timeline for d1nkkb_:

• d1nkkb_ first appeared in SCOP 1.63
  
• d1nkkb_ appears in SCOPe 2.07