SCOPe 2.06: Domain d1gmyb_: 1gmy B:

Lineage for d1gmyb_ (1gmy B:)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.3: Cysteine proteinases [54000] (1 superfamily)
   consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn

4. Superfamily d.3.1: Cysteine proteinases [54001] (24 families)
   the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet

5. Family d.3.1.1: Papain-like [54002] (26 proteins)

6. Protein (Pro)cathepsin B [54022] (3 species)

7. Species Human (Homo sapiens) [TaxId:9606] [54023] (6 PDB entries)

8. Domain d1gmyb_: 1gmy B: [76237]
   complexed with aem, apd, dfa

Details for d1gmyb_

PDB Entry: 1gmy, 1.9 Å

PDB Description: cathepsin b complexed with dipeptidyl nitrile inhibitor

PDB Compounds: (B:) cathepsin b

SCOPe Domain Sequences for d1gmyb_:

Sequence; same for both SEQRES and ATOM records:

>d1gmyb_ d.3.1.1 (B:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]}
klpasfdareqwpqcptikeirdqgscgscwafgaveaisdricihtnahvsvevsaedl
ltccgsmcgdgcnggypaeawnfwtrkglvsgglyeshvgcrpysippcehhvngsrppc
tgegdtpkcskicepgysptykqdkhygynsysvsnsekdimaeiykngpvegafsvysd
fllyksgvyqhvtgemmgghairilgwgvengtpywlvanswntdwgdngffkilrgqdh
cgiesevvagipr

Timeline for d1gmyb_:

• d1gmyb_ first appeared in SCOP 1.63
  
• d1gmyb_ appears in SCOPe 2.05
  
• d1gmyb_ appears in SCOPe 2.07
  
• d1gmyb_ appears in the current release, SCOPe 2.08