SCOPe 2.08: Domain d1k83a_: 1k83 A:

Lineage for d1k83a_ (1k83 A:)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.29: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483] (1 superfamily)
   Multidomain subunits of complex domain organization

4. Superfamily e.29.1: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484] (3 families)
   The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit

5. Family e.29.1.2: RNA-polymerase beta-prime [64490] (4 proteins)

6. Protein RBP1 [64486] (2 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [64487] (24 PDB entries)
   Uniprot P04050; part of multichain biological unit

8. Domain d1k83a_: 1k83 A: [68275]
   Other proteins in same PDB: d1k83b_, d1k83c1, d1k83c2, d1k83e1, d1k83e2, d1k83f_, d1k83h_, d1k83i1, d1k83i2, d1k83j_, d1k83k_, d1k83l_
   protein/DNA complex; protein/RNA complex; complexed with mn, zn

Details for d1k83a_

PDB Entry: 1k83, 2.8 Å

PDB Description: Crystal Structure of Yeast RNA Polymerase II Complexed with the Inhibitor Alpha Amanitin

PDB Compounds: (A:) DNA-directed RNA polymerase II largest subunit

SCOPe Domain Sequences for d1k83a_:

Sequence, based on SEQRES records:

>d1k83a_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
qyssaplrtvkevqfglfspeevraisvakirfpetmdetqtrakigglndprlgsidrn
lkcqtcqegmnecpghfghidlakpvfhvgfiakikkvcecvcmhcgkllldehnelmrq
alaikdskkrfaaiwtlcktkmvcetdvpseddptqlvsrggcgntqptirkdglklvgs
wkkdratgdadepelrvlsteeilnifkhisvkdftslgfnevfsrpewmiltclpvppp
pvrpsisfnesqrgeddltfkladilkanisletlehngaphhaieeaesllqfhvatym
dndiagqpqalqksgrpvksirarlkgkegrirgnlmgkrvdfsartvisgdpnleldqv
gvpksiaktltypevvtpynidrltqlvrngpnehpgakyvirdsgdridlryskragdi
qlqygwkverhimdndpvlfnrqpslhkmsmmahrvkvipystfrlnlsvtspynadfdg
demnlhvpqseetraelsqlcavplqivspqsnkpcmgivqdtlcgirkltlrdtfield
qvlnmlywvpdwdgviptpaiikpkplwsgkqilsvaipngihlqrfdegttllspkdng
mliidgqiifgvvekktvgssngglihvvtrekgpqvcaklfgniqkvvnfwllhngfst
gigdtiadgptmreitetiaeakkkvldvtkeaqanlltakhgmtlresfednvvrflne
ardkagrlaevnlkdlnnvkqmvmagskgsfiniaqmsacvgqqsvegkriafgfvdrtl
phfskddyspeskgfvensylrgltpqefffhamggreglidtavktaetgyiqrrlvka
ledimvhydnttrnslgnviqfiygedgmdaahiekqsldtiggsdaafekryrvdllnt
dhtldpsllesgseilgdlklqvlldeeykqlvkdrkflrevfvdgeanwplpvnirrii
qnaqqtfhidhtkpsdltikdivlgvkdlqenllvlrgkneiiqnaqrdavtlfccllrs
rlatrrvlqeyrltkqafdwvlsnieaqflrsvvhpgemvgvlaaqsigepatqmtlntf
hfagvaskkvtsgvprlkeilnvaknmktpsltvylepghaadqeqaklirsaiehttlk
svtiaseiyydpdprstvipedeeiiqlhfslldeeaeqsfdqqspwllrleldraamnd
kdltmgqvgerikqtfkndlfviwsedndekliircrvvrpksldaeteaeedhmlkkie
ntmlenitlrgveniervvmmkydrkvpsptgeyvkepewvletdgvnlsevmtvpgidp
triytnsfidimevlgieagraalykevynviasdgsyvnyrhmallvdvmttqggltsv
trhgfnrsntgalmrcsfeetveilfeagasaelddcrgvsenvilgqmapigtgafdvm
ideesl

Sequence, based on observed residues (ATOM records):

>d1k83a_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
qyssaplrtvkevqfglfspeevraisvakirfpekigglndprlgsidrnlkcqtcqeg
mnecpghfghidlakpvfhvgfiakikkvcecvcmhcgkllldehnelmrqalaikdskk
rfaaiwtlcktkmvcetdvpseddptqlvsrggcgntqptirkdglklvgswkkepelrv
lsteeilnifkhisvkdftslgfnevfsrpewmiltclpvppppvrddltfkladilkan
isletlehngaphhaieeaesllqfhvatymdndiagqsirarlkgkegrivdfsartvi
sgdpnleldqvgvpksiaktltypevvtpynidrltqlvrngpnehpgakyvirdsgdri
dlryskragdiqlqygwkverhimdndpvlfnrqpslhkmsmmahrvkvipystfrlnls
vtspynadfdgdemnlhvpqseetraelsqlcavplqivspqsnkpcmgivqdtlcgirk
ltlrdtfieldqvlnmlywvpdwdgviptpaiikpkplwsgkqilsvaipngihlqrfde
gttllspkdngmliidgqiifgvvekktvgssngglihvvtrekgpqvcaklfgniqkvv
nfwllhngfstgigdtiadgptmreitetiaeakkkvldvtkeaqanlltakhgmtlres
fednvvrflneardkagrlaevnlkdlnnvkqmvmagskgsfiniaqmsacvgqqsvegk
riafgfvdrtlphfskddyspeskgfvensylrgltpqefffhamggreglidtavktae
tgyiqrrlvkaledimvhydnttrnslgnviqfiygedgmdaahiekqsldtiggsdaaf
ekryrvdllntdhtldpsllesgseilgdlklqvlldeeykqlvkdrkflrevfvdgean
wplpvnirriiqnaqqtfhidhtkpsdltikdivlgvkdlqenllvlrgkneiiqnaqrd
avtlfccllrsrlatrrvlqeyrltkqafdwvlsnieaqflrsvvhpgemvgvlaaqsig
epatqmtlkkvtsgvprlkeilnvaknmktpsltvylepghaadqeqaklirsaiehttl
ksvtiaseiyydpdprstvipedeeiiqlhfsqqspwllrleldraamndkdltmgqvge
rikqtfkndlfviwsedndekliircrvvaeedhmlkkientmlenitlrgveniervvm
mkydrkvpsptgeyvkepewvletdgvnlsevmtvpgidptriytnsfidimevlgieag
raalykevynviasdgsyvnyrhmallvdvmttqggltsvtrhgfnrsntgalmrcsfee
tveilfeagasaelddcrgvsenvilgqmapigtgafdvmideesl

Timeline for d1k83a_:

• d1k83a_ first appeared in SCOP 1.59
  
• d1k83a_ appears in SCOPe 2.07