SCOPe 2.04: Family d.165.1.1: Plant cytotoxins

Lineage for Family d.165.1.1: Plant cytotoxins

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.165: Ribosome inactivating proteins (RIP) [56370] (1 superfamily)
   contains mixed beta-sheet

4. Superfamily d.165.1: Ribosome inactivating proteins (RIP) [56371] (3 families)

5. Family d.165.1.1: Plant cytotoxins [56372] (18 proteins)

Proteins:

1. Abrin A-chain [56383] (1 species)

   • Species Abrus precatorius [TaxId:3816] [56384] (1 PDB entry)

2. Agglutinin-1 chain A [160917] (1 species)

   • Species Abrus precatorius [TaxId:3816] [160918] (1 PDB entry)
     Uniprot Q9M6E9 22-268

3. alpha-Momorcharin (momordin) [56377] (1 species)

   • Species Bitter gourd (Momordica charantia) [TaxId:3673] [56378] (8 PDB entries)

4. alpha-Trichosanthin [56373] (1 species)

   • Species Mongolian snake gourd (Trichosanthes kirilowii Maxim.) [TaxId:3677] [56374] (9 PDB entries)

5. Antiviral protein 3 [90055] (1 species)

   • Species Pokeweed (Phytolacca americana) [TaxId:3527] [90056] (1 PDB entry)

6. Antiviral protein S [103333] (1 species)
   seed isoform

   • Species Pokeweed (Phytolacca americana) [TaxId:3527] [103334] (4 PDB entries)

7. Beta-luffin [103331] (1 species)

   • Species Smooth loofah (Luffa cylindrica) [TaxId:3670] [103332] (1 PDB entry)

8. Beta-momorcharin [56379] (1 species)
   (almost) identical with the anti-tumor and anti-HIV-1 protein MAP30

   • Species Bitter gourd (Momordica charantia) [TaxId:3673] [56380] (2 PDB entries)

9. Bouganin [160915] (1 species)

   • Species Bougainvillea (Bougainvillea spectabilis) [TaxId:146096] [160916] (1 PDB entry)
     Uniprot Q8W4U4 27-272

10. Bryodin [56375] (1 species)

    • Species Red briony (Bryonia dioica) [TaxId:3652] [56376] (1 PDB entry)

11. Dianthin 30 [103335] (1 species)

    • Species Clove pink (Dianthus caryophyllus) [TaxId:3570] [103336] (4 PDB entries)
      Uniprot P24476 24-278

12. Ebulin A-chain [56391] (1 species)

    • Species Sambucus ebulus [TaxId:28503] [56392] (4 PDB entries)

13. Lectin 1 A-chain [90053] (1 species)

    • Species Mongolian snake-gourd (Trichosanthes kirilowii) [TaxId:3677] [90054] (1 PDB entry)

14. Mistletoe lectin I A-chain [56381] (1 species)

    • Species European mistletoe (Viscum album) [TaxId:3972] [56382] (11 PDB entries)
      different sequence variants
      Uniprot P81446 1-249
      Uniprot Q6ITZ3 1-240

15. Pokeweed antiviral protein alpha [56385] (1 species)

    • Species Pokeweed (Phytolacca americana) [TaxId:3527] [56386] (7 PDB entries)

16. Ricin A-chain [56389] (1 species)

    • Species Castor bean (Ricinus communis) [TaxId:3988] [56390] (37 PDB entries)
      Uniprot P06750 28-286

17. Saporin So6 [56387] (1 species)

    • Species Common soapwort (Saponaria officinalis) [TaxId:3572] [56388] (1 PDB entry)

18. automated matches [190420] (8 species)
    not a true protein

    1. Species Abrus precatorius [TaxId:3816] [189038] (1 PDB entry)

    2. Species Castor bean (Ricinus communis) [TaxId:3988] [188830] (7 PDB entries)

    3. Species Cushaw squash (Cucurbita moschata) [TaxId:3662] [188622] (1 PDB entry)

    4. Species European mistletoe (Viscum album) [TaxId:3972] [188629] (6 PDB entries)

    5. Species Momordica balsamina [TaxId:3672] [189375] (55 PDB entries)

    6. Species Mongolian snake-gourd (Trichosanthes kirilowii) [TaxId:3677] [187299] (2 PDB entries)

    7. Species Phytolacca acinosa [188469] (1 PDB entry)

    8. Species Phytolacca dioica [TaxId:29725] [188356] (6 PDB entries)

More info for Family d.165.1.1: Plant cytotoxins

Timeline for Family d.165.1.1: Plant cytotoxins:

• Family d.165.1.1: Plant cytotoxins first appeared (with stable ids) in SCOP 1.55
  
• Family d.165.1.1: Plant cytotoxins appears in SCOPe 2.03
  
• Family d.165.1.1: Plant cytotoxins appears in SCOPe 2.05
  
• Family d.165.1.1: Plant cytotoxins appears in the current release, SCOPe 2.08