SCOPe 2.02: Protein: Naphthalene 1,2-dioxygenase alpha subunit, C-domain

Lineage for Protein: Naphthalene 1,2-dioxygenase alpha subunit, C-domain

Root: SCOPe 2.02
Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
Fold d.129: TBP-like [55944] (11 superfamilies)
beta-alpha-beta(4)-alpha

Superfamily d.129.3: Bet v1-like [55961] (11 families)

contains a single copy of this fold with a alpha-beta2 insertion after the first helix; there is a cavity between the beta-sheet and the long C-terminal helix

Family d.129.3.3: Ring hydroxylating alpha subunit catalytic domain [55969] (6 proteins)
Pfam PF00848; contains a few insertion and C-terminal extension compared with Bet v1
Protein Naphthalene 1,2-dioxygenase alpha subunit, C-domain [55970] (2 species)

Species:

Pseudomonas putida [TaxId:303] [55971] (16 PDB entries)
1. Domain for 1eg9:
  - Domain d1eg9a2: 1eg9 A:155-447 [41322]
    Other proteins in same PDB: d1eg9a1, d1eg9b_
    complexed with fe, fes, ind, so4
2. Domains for 1ndo:
  1. Domain d1ndoa2: 1ndo A:155-447 [41323]
    Other proteins in same PDB: d1ndoa1, d1ndob_, d1ndoc1, d1ndod_, d1ndoe1, d1ndof_
    complexed with fe, fes
  2. Domain d1ndoc2: 1ndo C:155-447 [41324]
    Other proteins in same PDB: d1ndoa1, d1ndob_, d1ndoc1, d1ndod_, d1ndoe1, d1ndof_
    complexed with fe, fes
  3. Domain d1ndoe2: 1ndo E:155-445 [41325]
    Other proteins in same PDB: d1ndoa1, d1ndob_, d1ndoc1, d1ndod_, d1ndoe1, d1ndof_
    complexed with fe, fes
3. Domain for 1o7g:
  - Domain d1o7ga2: 1o7g A:155-448 [81135]
    Other proteins in same PDB: d1o7ga1, d1o7gb_
    complexed with edo, fe, fes, npy, so4
4. Domain for 1o7h:
  - Domain d1o7ha2: 1o7h A:155-448 [81138]
    Other proteins in same PDB: d1o7ha1, d1o7hb_
    complexed with edo, fe, fes, so4
5. Domain for 1o7m:
  - Domain d1o7ma2: 1o7m A:155-448 [81160]
    Other proteins in same PDB: d1o7ma1, d1o7mb_
    complexed with edo, fe, fes, oxy, so4
6. Domain for 1o7n:
  - Domain d1o7na2: 1o7n A:155-448 [81163]
    Other proteins in same PDB: d1o7na1, d1o7nb_
    complexed with edo, fe, fes, ind, oxy, so4
7. Domain for 1o7p:
  - Domain d1o7pa2: 1o7p A:155-447 [81166]
    Other proteins in same PDB: d1o7pa1, d1o7pb_
    complexed with edo, fe, fes, ndh, so4
8. Domain for 1o7w:
  - Domain d1o7wa2: 1o7w A:155-447 [81169]
    Other proteins in same PDB: d1o7wa1, d1o7wb_
    complexed with edo, fe, fes, so4
9. Domain for 1uuv:
  - Domain d1uuva2: 1uuv A:155-447 [119700]
    Other proteins in same PDB: d1uuva1, d1uuvb_
    automatically matched to d1o7ga2
    complexed with edo, fe, fes, ind, no, so4
10. Domain for 1uuw:
  - Domain d1uuwa2: 1uuw A:155-447 [119703]
    Other proteins in same PDB: d1uuwa1, d1uuwb_
    automatically matched to d1o7ga2
    complexed with fe, fes, no, so4
11. Domain for 2hmj:
  - Domain d2hmja2: 2hmj A:155-446 [136586]
    Other proteins in same PDB: d2hmja1, d2hmjb_
    automatically matched to d1o7ga2
    complexed with edo, fe, fes, so4; mutant
12. Domain for 2hmk:
  - Domain d2hmka2: 2hmk A:155-446 [136589]
    Other proteins in same PDB: d2hmka1, d2hmkb_
    automatically matched to d1o7ga2
    complexed with edo, fe, fes, pey, so4
13. Domain for 2hml:
  - Domain d2hmla2: 2hml A:155-446 [136592]
    Other proteins in same PDB: d2hmla1, d2hmlb_
    automatically matched to d1o7ga2
    complexed with edo, fe, fes, pey, so4; mutant
14. Domain for 2hmm:
  - Domain d2hmma2: 2hmm A:155-446 [136595]
    Other proteins in same PDB: d2hmma1, d2hmmb_
    automatically matched to d1o7ga2
    complexed with an3, edo, fe, fes, so4
15. Domain for 2hmn:
  - Domain d2hmna2: 2hmn A:155-446 [136598]
    Other proteins in same PDB: d2hmna1, d2hmnb_
    automatically matched to d1o7ga2
    complexed with an3, edo, fe, fes, so4; mutant
16. Domain for 2hmo:
  - Domain d2hmoa2: 2hmo A:155-446 [136601]
    Other proteins in same PDB: d2hmoa1, d2hmob_
    automatically matched to d1o7ga2
    complexed with 3nt, edo, fe, fes, so4
Rhodococcus sp. ncimb12038 [TaxId:92694] [143822] (2 PDB entries)
Uniprot Q9X3R9 163-441
1. Domains for 2b1x:
  1. Domain d2b1xa2: 2b1x A:163-441 [127676]
    Other proteins in same PDB: d2b1xa1, d2b1xb1, d2b1xc1, d2b1xd_, d2b1xe1, d2b1xf_
    complexed with fe, fes, mpd
  2. Domain d2b1xc2: 2b1x C:163-441 [127679]
    Other proteins in same PDB: d2b1xa1, d2b1xb1, d2b1xc1, d2b1xd_, d2b1xe1, d2b1xf_
    automatically matched to 2B1X A:163-441
    complexed with fe, fes, mpd
  3. Domain d2b1xe2: 2b1x E:163-441 [127682]
    Other proteins in same PDB: d2b1xa1, d2b1xb1, d2b1xc1, d2b1xd_, d2b1xe1, d2b1xf_
    automatically matched to 2B1X A:163-441
    complexed with fe, fes, mpd
2. Domains for 2b24:
  1. Domain d2b24a2: 2b24 A:163-440 [127691]
    Other proteins in same PDB: d2b24a1, d2b24b1, d2b24c1, d2b24d1, d2b24e1, d2b24f1
    automatically matched to 2B1X A:163-441
    complexed with fe, fes, ind
  2. Domain d2b24c2: 2b24 C:163-440 [127694]
    Other proteins in same PDB: d2b24a1, d2b24b1, d2b24c1, d2b24d1, d2b24e1, d2b24f1
    automatically matched to 2B1X A:163-441
    complexed with fe, fes, ind
  3. Domain d2b24e2: 2b24 E:163-440 [127697]
    Other proteins in same PDB: d2b24a1, d2b24b1, d2b24c1, d2b24d1, d2b24e1, d2b24f1
    automatically matched to 2B1X A:163-441
    complexed with fe, fes, ind

More info for Protein Naphthalene 1,2-dioxygenase alpha subunit, C-domain from d.129.3.3: Ring hydroxylating alpha subunit catalytic domain

Timeline for Protein Naphthalene 1,2-dioxygenase alpha subunit, C-domain from d.129.3.3: Ring hydroxylating alpha subunit catalytic domain:

Protein Naphthalene 1,2-dioxygenase alpha subunit, C-domain from d.129.3.3: Ring hydroxylating alpha subunit catalytic domain first appeared (with stable ids) in SCOP 1.55, called Protein Naphthalene 1,2-dioxygenase alpha subunit, C-domain from d.129.3.3: Naphthalene 1,2-dioxygenase alpha subunit, C-domain
Protein Naphthalene 1,2-dioxygenase alpha subunit, C-domain from d.129.3.3: Ring hydroxylating alpha subunit catalytic domain appears in SCOPe 2.01
Protein Naphthalene 1,2-dioxygenase alpha subunit, C-domain from d.129.3.3: Ring hydroxylating alpha subunit catalytic domain appears in SCOPe 2.03
Protein Naphthalene 1,2-dioxygenase alpha subunit, C-domain from d.129.3.3: Ring hydroxylating alpha subunit catalytic domain appears in the current release, SCOPe 2.08