SCOP 1.65: Protein: Alpha chain

Lineage for Protein: Alpha chain

Root: SCOP 1.65
Class d: Alpha and beta proteins (a+b) [53931] (234 folds)
Fold d.58: Ferredoxin-like [54861] (48 superfamilies)
alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

Superfamily d.58.31: Methyl-coenzyme M reductase subunits [55088] (2 families)

(S)

each of the three different subunits, alpha, beta and gamma, contains this fold decorated with additional secondary structures

Family d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain [55094] (2 proteins)
C-terminal domain is all-alpha
Protein Alpha chain [55095] (3 species)

Species:

Archaeon Methanobacterium thermoautotrophicum [TaxId:145262] [55096] (5 PDB entries)
1. Domains for 1hbm:
  1. Domain d1hbma2: 1hbm A:2-269 [60889]
    Other proteins in same PDB: d1hbma1, d1hbmb1, d1hbmb2, d1hbmc_, d1hbmd1, d1hbme1, d1hbme2, d1hbmf_
  2. Domain d1hbmd2: 1hbm D:2-269 [60894]
    Other proteins in same PDB: d1hbma1, d1hbmb1, d1hbmb2, d1hbmc_, d1hbmd1, d1hbme1, d1hbme2, d1hbmf_
    complexed with cl, f43, gol, mg, mgn, na, sht, zn
2. Domains for 1hbn:
  1. Domain d1hbna2: 1hbn A:2-269 [60899]
    Other proteins in same PDB: d1hbna1, d1hbnb1, d1hbnb2, d1hbnc_, d1hbnd1, d1hbne1, d1hbne2, d1hbnf_
  2. Domain d1hbnd2: 1hbn D:2-269 [60904]
    Other proteins in same PDB: d1hbna1, d1hbnb1, d1hbnb2, d1hbnc_, d1hbnd1, d1hbne1, d1hbne2, d1hbnf_
    complexed with cl, com, f43, gol, mg, mgn, na, tp7, zn
3. Domains for 1hbo:
  1. Domain d1hboa2: 1hbo A:2-269 [60909]
    Other proteins in same PDB: d1hboa1, d1hbob1, d1hbob2, d1hboc_, d1hbod1, d1hboe1, d1hboe2, d1hbof_
  2. Domain d1hbod2: 1hbo D:2-269 [60914]
    Other proteins in same PDB: d1hboa1, d1hbob1, d1hbob2, d1hboc_, d1hbod1, d1hboe1, d1hboe2, d1hbof_
    complexed with cl, com, f43, gol, mg, mgn, na, tp7, zn
4. Domains for 1hbu:
  1. Domain d1hbua2: 1hbu A:2-269 [60919]
    Other proteins in same PDB: d1hbua1, d1hbub1, d1hbub2, d1hbuc_, d1hbud1, d1hbue1, d1hbue2, d1hbuf_
  2. Domain d1hbud2: 1hbu D:2-269 [60924]
    Other proteins in same PDB: d1hbua1, d1hbub1, d1hbub2, d1hbuc_, d1hbud1, d1hbue1, d1hbue2, d1hbuf_
    complexed with cl, com, f43, gol, mg, mgn, na, tp7, zn
5. Domains for 1mro:
  1. Domain d1mroa2: 1mro A:2-269 [39443]
    Other proteins in same PDB: d1mroa1, d1mrob1, d1mrob2, d1mroc_, d1mrod1, d1mroe1, d1mroe2, d1mrof_
  2. Domain d1mrod2: 1mro D:2-269 [39444]
    Other proteins in same PDB: d1mroa1, d1mrob1, d1mrob2, d1mroc_, d1mrod1, d1mroe1, d1mroe2, d1mrof_
    complexed with com, f43, gol, mgn, na, tp7, zn
Archaeon Methanopyrus kandleri [TaxId:2320] [55097] (1 PDB entry)
- Domains for 1e6v:
  1. Domain d1e6va2: 1e6v A:8-272 [39445]
    Other proteins in same PDB: d1e6va1, d1e6vb1, d1e6vb2, d1e6vc_, d1e6vd1, d1e6ve1, d1e6ve2, d1e6vf_
  2. Domain d1e6vd2: 1e6v D:8-272 [39446]
    Other proteins in same PDB: d1e6va1, d1e6vb1, d1e6vb2, d1e6vc_, d1e6vd1, d1e6ve1, d1e6ve2, d1e6vf_
    complexed with com, f43, tp7
Archaeon Methanosarcina barkeri [TaxId:2208] [55098] (1 PDB entry)
- Domains for 1e6y:
  1. Domain d1e6ya2: 1e6y A:1002-1283 [39447]
    Other proteins in same PDB: d1e6ya1, d1e6yb1, d1e6yb2, d1e6yc_, d1e6yd1, d1e6ye1, d1e6ye2, d1e6yf_
  2. Domain d1e6yd2: 1e6y D:4002-4283 [39448]
    Other proteins in same PDB: d1e6ya1, d1e6yb1, d1e6yb2, d1e6yc_, d1e6yd1, d1e6ye1, d1e6ye2, d1e6yf_
    complexed with com, f43, gol, tp7

More info for Protein Alpha chain from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain

Timeline for Protein Alpha chain from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain:

Protein Alpha chain from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain first appeared (with stable ids) in SCOP 1.55
Protein Alpha chain from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain appears in SCOP 1.63
Protein Alpha chain from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain appears in SCOP 1.67
Protein Alpha chain from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain appears in the current release, SCOPe 2.08