SCOPe 2.06: Family d.54.1.1: Enolase N-terminal domain-like

Lineage for Family d.54.1.1: Enolase N-terminal domain-like

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.54: Enolase N-terminal domain-like [54825] (1 superfamily)
   beta(3)-alpha(3); meander and up-and-down bundle

4. Superfamily d.54.1: Enolase N-terminal domain-like [54826] (2 families)

5. Family d.54.1.1: Enolase N-terminal domain-like [54827] (15 proteins)
   C-terminal domain is beta/alpha-barrel

Proteins:

1. beta-Methylaspartase [69714] (2 species)

   1. Species Citrobacter amalonaticus [TaxId:35703] [69716] (2 PDB entries)

   2. Species Clostridium tetanomorphum [TaxId:1553] [69715] (2 PDB entries)

2. Chlormuconate cycloisomerase [54840] (2 species)

   1. Species Alcaligenes eutrophus [TaxId:106590] [54841] (1 PDB entry)

   2. Species Pseudomonas sp. p51 [TaxId:65067] [102948] (1 PDB entry)

3. D-glucarate dehydratase [54831] (2 species)

   1. Species Escherichia coli [TaxId:562] [54833] (7 PDB entries)

   2. Species Pseudomonas putida [TaxId:303] [54832] (1 PDB entry)

4. D-mannonate dehydratase [267663] (1 species)

   • Species Escherichia coli [TaxId:199310] [267746] (1 PDB entry)

5. Enolase [54828] (10 species)

   1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [54829] (16 PDB entries)

   2. Species Enterococcus hirae [TaxId:1354] [89926] (1 PDB entry)

   3. Species Escherichia coli [TaxId:562] [69710] (2 PDB entries)

   4. Species European lobster (Homarus vulgaris) [TaxId:6707] [54830] (2 PDB entries)

   5. Species Human (Homo sapiens), gamma isoform [TaxId:9606] [110936] (15 PDB entries)
      Uniprot P09104

   6. Species Methanocaldococcus jannaschii [TaxId:2190] [225342] (1 PDB entry)

   7. Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [143247] (1 PDB entry)
      Uniprot Q8DPS0 1-137

   8. Species Staphylococcus aureus [TaxId:1280] [311488] (2 PDB entries)

   9. Species Trypanosoma brucei brucei [TaxId:5702] [89925] (1 PDB entry)

   10. Species Trypanosome (Trypanosoma brucei) [TaxId:5691] [160264] (6 PDB entries)

6. Hypothetical protein Atu3453 [102949] (1 species)

   • Species Agrobacterium tumefaciens [TaxId:358] [102950] (1 PDB entry)

7. Hypothetical protein Bll6730 [117927] (1 species)

   • Species Bradyrhizobium japonicum [TaxId:375] [117928] (1 PDB entry)
     Uniprot Q89FH0

8. Hypothetical protein YitF [143248] (1 species)

   • Species Bacillus subtilis [TaxId:1423] [143249] (2 PDB entries)
     Uniprot O06741 1-114

9. L-Ala-D/L-Glu epimerase [69711] (2 species)

   1. Species Bacillus subtilis [TaxId:1423] [69713] (2 PDB entries)
      Uniprot O34508

   2. Species Escherichia coli [TaxId:562] [69712] (1 PDB entry)

10. Mandelate racemase [54838] (3 species)

    1. Species Clostridium beijerinckii [TaxId:290402] [267744] (2 PDB entries)

    2. Species Dickeya dadantii [TaxId:579405] [267742] (1 PDB entry)

    3. Species Pseudomonas putida [TaxId:303] [54839] (6 PDB entries)

11. Muconate-lactonizing enzyme (cis muconate cycloisomerase) [54836] (1 species)

    • Species Pseudomonas putida [TaxId:303] [54837] (5 PDB entries)

12. N-acylamino acid racemase [110937] (4 species)

    1. Species Amycolatopsis sp. [TaxId:37632] [110938] (4 PDB entries)
       Uniprot Q44244; similar activity to a remotely related O-succinylbenzoate synthase from E. coli

    2. Species Deinococcus radiodurans [TaxId:1299] [110939] (5 PDB entries)
       Uniprot Q9RYA6

    3. Species Enterococcus faecalis [TaxId:1351] [117925] (1 PDB entry)
       Uniprot Q838J7; EF0450; protein assignment by sequence similarity

    4. Species Listeria innocua [TaxId:1642] [117926] (1 PDB entry)
       Uniprot Q927X3; Lin2664; protein assignment by sequence similarity

13. O-succinylbenzoate synthase [54834] (1 species)

    • Species Escherichia coli [TaxId:562] [54835] (4 PDB entries)

14. Putative dehydratase protein STM2273 [143250] (2 species)

    1. Species Salmonella enterica [TaxId:90371] [226346] (1 PDB entry)

    2. Species Salmonella typhimurium [TaxId:90371] [143251] (1 PDB entry)
       Uniprot Q8ZNH1 1-122

15. RTS beta protein [117929] (1 species)

    • Species Xanthomonas campestris pv. campestris [TaxId:340] [117930] (1 PDB entry)
      Uniprot Q8P3K2; extended, mainly helical linker between the domains

More info for Family d.54.1.1: Enolase N-terminal domain-like

Timeline for Family d.54.1.1: Enolase N-terminal domain-like:

• Family d.54.1.1: Enolase N-terminal domain-like first appeared (with stable ids) in SCOP 1.55
  
• Family d.54.1.1: Enolase N-terminal domain-like appears in SCOPe 2.05
  
• Family d.54.1.1: Enolase N-terminal domain-like appears in SCOPe 2.07
  
• Family d.54.1.1: Enolase N-terminal domain-like appears in the current release, SCOPe 2.08