SCOPe 2.08: Family c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes

Lineage for Family c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.79: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53685] (1 superfamily)
   consists of two similar domains related by pseudo dyad; duplication
   core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214

4. Superfamily c.79.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53686] (2 families)

5. Family c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53687] (9 proteins)

Proteins:

1. 1-aminocyclopropane-1-carboxylate deaminase [53694] (3 species)

   1. Species Pseudomonas sp., strain ACP [TaxId:306] [110722] (6 PDB entries)
      Uniprot Q00740

   2. Species Pyrococcus horikoshii [TaxId:53953] [89777] (2 PDB entries)

   3. Species Yeast (Hansenula saturnus) [TaxId:4906] [53695] (4 PDB entries)

2. Cystathionine beta-synthase [64174] (1 species)
   PLP-dependent hemoprotein

   • Species Human (Homo sapiens) [TaxId:9606] [64175] (3 PDB entries)

3. Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) [142749] (1 species)

   • Species Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [142750] (1 PDB entry)
     Uniprot O59791 6-323

4. L-serine dehydratase [102668] (2 species)

   1. Species Human (Homo sapiens) [TaxId:9606] [110721] (1 PDB entry)
      Uniprot P20132

   2. Species Norway rat (Rattus norvegicus) [TaxId:10116] [102669] (2 PDB entries)

5. O-acetylserine sulfhydrylase (Cysteine synthase) [53690] (7 species)

   1. Species Aeropyrum pernix [TaxId:56636] [142742] (7 PDB entries)
      Uniprot Q9YBL2 1-382

   2. Species Escherichia coli, isoform B (CysM) [TaxId:562] [142744] (2 PDB entries)
      Uniprot P16703 2-293

   3. Species Haemophilus influenzae [TaxId:727] [142746] (3 PDB entries)
      Uniprot P45040 2-311

   4. Species Salmonella typhimurium [TaxId:90371] [53691] (3 PDB entries)

   5. Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [142745] (2 PDB entries)
      Uniprot P47998 3-322

   6. Species Thermotoga maritima [TaxId:2336] [75312] (2 PDB entries)
      TM0665

   7. Species Thermus thermophilus [TaxId:274] [142743] (1 PDB entry)
      Uniprot Q5SLE6 1-302

6. Threonine deaminase [53692] (2 species)

   1. Species Escherichia coli [TaxId:562] [53693] (1 PDB entry)

   2. Species Thermus thermophilus [TaxId:274] [142747] (1 PDB entry)
      Uniprot Q5SLL4 2-311

7. Threonine synthase [64172] (4 species)

   1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [75313] (1 PDB entry)

   2. Species Escherichia coli [TaxId:562] [142748] (1 PDB entry)
      Uniprot P00934 1-428

   3. Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [64173] (3 PDB entries)

   4. Species Thermus thermophilus [TaxId:274] [102667] (6 PDB entries)

8. Tryptophan synthase, beta-subunit [53688] (4 species)

   1. Species Mycobacterium tuberculosis [TaxId:1773] [267796] (2 PDB entries)

   2. Species Pyrococcus furiosus [TaxId:2261] [142741] (2 PDB entries)
      Uniprot Q8U093 1-386

   3. Species Salmonella enterica [TaxId:90371] [229810] (8 PDB entries)

   4. Species Salmonella typhimurium [TaxId:90371] [53689] (66 PDB entries)

9. automated matches [190054] (13 species)
   not a true protein

   1. Species Aeropyrum pernix [TaxId:272557] [195353] (3 PDB entries)

   2. Species Escherichia coli [TaxId:562] [187621] (3 PDB entries)

   3. Species Escherichia coli [TaxId:83334] [320059] (2 PDB entries)

   4. Species Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [188093] (3 PDB entries)

   5. Species Francisella tularensis [TaxId:177416] [321163] (1 PDB entry)

   6. Species Haemophilus influenzae [TaxId:727] [189119] (3 PDB entries)

   7. Species Human (Homo sapiens) [TaxId:9606] [256281] (1 PDB entry)

   8. Species Pyrococcus furiosus [TaxId:186497] [279274] (16 PDB entries)

   9. Species Pyrococcus furiosus [TaxId:2261] [327480] (1 PDB entry)

   10. Species Salmonella typhimurium [TaxId:90371] [189633] (15 PDB entries)

   11. Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [187877] (1 PDB entry)

   12. Species Thermus thermophilus HB8 [TaxId:300852] [187272] (5 PDB entries)

   13. Species Thermus thermophilus [TaxId:274] [188788] (1 PDB entry)

More info for Family c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes

Timeline for Family c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes:

• Family c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes first appeared (with stable ids) in SCOP 1.55
  
• Family c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes appears in SCOPe 2.07