Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2907391Fold c.79: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53685] (1 superfamily)
    consists of two similar domains related by pseudo dyad; duplication
    core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214
  4. 2907392Superfamily c.79.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53686] (2 families) (S)
  5. 2907393Family c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53687] (9 proteins)
  6. 2907681Protein automated matches [190054] (13 species)
    not a true protein

Species:

  1. 2907682Aeropyrum pernix [TaxId:272557] [195353] (3 PDB entries)
    1. Domains for 3vsa:
      1. 2907683Domain d3vsaa_: 3vsa A: [195359]
        automated match to d1wkvb_
        complexed with mpd, plp
      2. 2907684Domain d3vsab_: 3vsa B: [195358]
        automated match to d1wkvb_
        complexed with mpd, plp
    2. Domains for 3vsc:
      1. 2907685Domain d3vsca_: 3vsc A: [195356]
        automated match to d1wkvb_
        complexed with mpd, plp, sep; mutant
      2. 2907686Domain d3vscb_: 3vsc B: [195355]
        automated match to d1wkvb_
        complexed with mpd, plp, sep; mutant
    3. Domains for 3vsd:
      1. 2907687Domain d3vsda_: 3vsd A: [195357]
        automated match to d1wkvb_
        complexed with mpd, oas, plp; mutant
      2. 2907688Domain d3vsdb_: 3vsd B: [195354]
        automated match to d1wkvb_
        complexed with mpd, oas, plp; mutant
  2. 2907689Escherichia coli [TaxId:562] [187621] (3 PDB entries)
    1. Domain for 2dh5:
    2. Domain for 2dh6:
    3. Domain for 2v03:
  3. 2907693Escherichia coli [TaxId:83334] [320059] (2 PDB entries)
    1. Domains for 5j43:
      1. 2907694Domain d5j43a_: 5j43 A: [320077]
        automated match to d1d6sa_
      2. 2907695Domain d5j43e_: 5j43 E: [320240]
        automated match to d1d6sa_
    2. Domains for 5j5v:
      1. 2907696Domain d5j5va_: 5j5v A: [320060]
        automated match to d1d6sa_
      2. 2907697Domain d5j5vd_: 5j5v D: [320085]
        automated match to d1d6sa_
  4. 2907698Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [188093] (3 PDB entries)
    1. Domain for 1wtc:
    2. Domain for 2zpu:
    3. Domain for 2zr8:
  5. 2907702Francisella tularensis [TaxId:177416] [321163] (1 PDB entry)
  6. 2907704Haemophilus influenzae [TaxId:727] [189119] (3 PDB entries)
    1. Domain for 3iqg:
    2. Domain for 3iqh:
    3. Domain for 3iqi:
  7. 2907708Human (Homo sapiens) [TaxId:9606] [256281] (1 PDB entry)
  8. 2907710Pyrococcus furiosus [TaxId:186497] [279274] (16 PDB entries)
    1. Domains for 5dvz:
      1. 2907727Domain d5dvza_: 5dvz A: [313790]
        automated match to d5dw0a_
        complexed with na, po4
      2. 2907728Domain d5dvzb_: 5dvz B: [313796]
        automated match to d5dw0a_
        complexed with na, po4
      3. 2907729Domain d5dvzc_: 5dvz C: [313582]
        automated match to d5dw0a_
        complexed with na, po4
      4. 2907730Domain d5dvzd_: 5dvz D: [313513]
        automated match to d5dw0a_
        complexed with na, po4
    2. Domains for 5dw0:
      1. 2907755Domain d5dw0a_: 5dw0 A: [279280]
        automated match to d1v8zb_
        complexed with na, pls
      2. 2907756Domain d5dw0b_: 5dw0 B: [279278]
        automated match to d1v8zb_
        complexed with na, pls
      3. 2907757Domain d5dw0c_: 5dw0 C: [279281]
        automated match to d1v8zb_
        complexed with na, pls
      4. 2907758Domain d5dw0d_: 5dw0 D: [279282]
        automated match to d1v8zb_
        complexed with na, pls
    3. Domains for 5dw3:
      1. 2907731Domain d5dw3a_: 5dw3 A: [279275]
        automated match to d1v8zb_
        complexed with na, po4, trp
      2. 2907732Domain d5dw3b_: 5dw3 B: [279279]
        automated match to d1v8zb_
        complexed with na, po4, trp
      3. 2907733Domain d5dw3c_: 5dw3 C: [279276]
        automated match to d1v8zb_
        complexed with na, po4, trp
      4. 2907734Domain d5dw3d_: 5dw3 D: [279277]
        automated match to d1v8zb_
        complexed with na, po4, trp
    4. Domains for 5e0k:
      1. 2907767Domain d5e0kb_: 5e0k B: [279283]
        Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
        automated match to d1v8zb_
        complexed with po4
      2. 2907768Domain d5e0kd_: 5e0k D: [279284]
        Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
        automated match to d1v8zb_
        complexed with po4
      3. 2907769Domain d5e0kf_: 5e0k F: [279287]
        Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
        automated match to d1v8zb_
        complexed with po4
      4. 2907770Domain d5e0kh_: 5e0k H: [279290]
        Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
        automated match to d1v8zb_
        complexed with po4
      5. 2907771Domain d5e0kj_: 5e0k J: [279292]
        Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
        automated match to d1v8zb_
        complexed with po4
      6. 2907772Domain d5e0kl_: 5e0k L: [279291]
        Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
        automated match to d1v8zb_
        complexed with po4
    5. Domains for 5ixj:
      1. 2907715Domain d5ixja_: 5ixj A: [321510]
        Other proteins in same PDB: d5ixjb2, d5ixjd2
        automated match to d1v8zb_
        complexed with na, thr
      2. 2907716Domain d5ixjb1: 5ixj B:1-388 [321325]
        Other proteins in same PDB: d5ixjb2, d5ixjd2
        automated match to d1v8zb_
        complexed with na, thr
      3. 2907717Domain d5ixjc_: 5ixj C: [321349]
        Other proteins in same PDB: d5ixjb2, d5ixjd2
        automated match to d1v8zb_
        complexed with na, thr
      4. 2907718Domain d5ixjd1: 5ixj D:1-388 [321422]
        Other proteins in same PDB: d5ixjb2, d5ixjd2
        automated match to d1v8zb_
        complexed with na, thr
    6. Domains for 5vm5:
      1. 2907723Domain d5vm5a_: 5vm5 A: [334719]
        automated match to d5dw0a_
        complexed with 0jo, na, pls
      2. 2907724Domain d5vm5b_: 5vm5 B: [334685]
        automated match to d5dw0a_
        complexed with 0jo, na, pls
      3. 2907725Domain d5vm5c_: 5vm5 C: [334704]
        automated match to d5dw0a_
        complexed with 0jo, na, pls
      4. 2907726Domain d5vm5d_: 5vm5 D: [334814]
        automated match to d5dw0a_
        complexed with 0jo, na, pls
    7. Domains for 6am7:
      1. 2907711Domain d6am7a_: 6am7 A: [352128]
        automated match to d1v8zb_
        complexed with na, po4
      2. 2907712Domain d6am7b_: 6am7 B: [352068]
        automated match to d1v8zb_
        complexed with na, po4
      3. 2907713Domain d6am7c_: 6am7 C: [352350]
        automated match to d1v8zb_
        complexed with na, po4
      4. 2907714Domain d6am7d_: 6am7 D: [352131]
        automated match to d1v8zb_
        complexed with na, po4
    8. Domains for 6am8:
      1. 2907743Domain d6am8a_: 6am8 A: [352100]
        automated match to d1v8zb_
        complexed with na, plt, trp
      2. 2907744Domain d6am8b_: 6am8 B: [352101]
        automated match to d1v8zb_
        complexed with na, plt, trp
      3. 2907745Domain d6am8c_: 6am8 C: [352031]
        automated match to d1v8zb_
        complexed with na, plt, trp
      4. 2907746Domain d6am8d_: 6am8 D: [352032]
        automated match to d1v8zb_
        complexed with na, plt, trp
    9. Domains for 6am9:
      1. 2907759Domain d6am9a_: 6am9 A: [352166]
        automated match to d1v8zb_
        complexed with 0jo, na, pls
      2. 2907760Domain d6am9b_: 6am9 B: [352227]
        automated match to d1v8zb_
        complexed with 0jo, na, pls
      3. 2907761Domain d6am9c_: 6am9 C: [352327]
        automated match to d1v8zb_
        complexed with 0jo, na, pls
      4. 2907762Domain d6am9d_: 6am9 D: [352310]
        automated match to d1v8zb_
        complexed with 0jo, na, pls
    10. Domains for 6amc:
      1. 2907747Domain d6amca_: 6amc A: [352168]
        Other proteins in same PDB: d6amcb2
        automated match to d1v8zb_
        complexed with na
      2. 2907748Domain d6amcb1: 6amc B:1-388 [352033]
        Other proteins in same PDB: d6amcb2
        automated match to d1v8zb_
        complexed with na
      3. 2907749Domain d6amcc_: 6amc C: [352029]
        Other proteins in same PDB: d6amcb2
        automated match to d1v8zb_
        complexed with na
      4. 2907750Domain d6amcd_: 6amc D: [352345]
        Other proteins in same PDB: d6amcb2
        automated match to d1v8zb_
        complexed with na
    11. Domains for 6amh:
      1. 2907719Domain d6amha_: 6amh A: [352331]
        Other proteins in same PDB: d6amhb2
        automated match to d1v8zb_
        complexed with na, pls
      2. 2907720Domain d6amhb1: 6amh B:1-388 [352213]
        Other proteins in same PDB: d6amhb2
        automated match to d1v8zb_
        complexed with na, pls
      3. 2907721Domain d6amhc_: 6amh C: [352030]
        Other proteins in same PDB: d6amhb2
        automated match to d1v8zb_
        complexed with na, pls
      4. 2907722Domain d6amhd_: 6amh D: [352336]
        Other proteins in same PDB: d6amhb2
        automated match to d1v8zb_
        complexed with na, pls
    12. Domains for 6ami:
      1. 2907751Domain d6amia_: 6ami A: [352340]
        automated match to d1v8zb_
        complexed with llp, na, trp
      2. 2907752Domain d6amib_: 6ami B: [352288]
        automated match to d1v8zb_
        complexed with llp, na, trp
      3. 2907753Domain d6amic_: 6ami C: [352349]
        automated match to d1v8zb_
        complexed with llp, na, trp
      4. 2907754Domain d6amid_: 6ami D: [352341]
        automated match to d1v8zb_
        complexed with llp, na, trp
    13. Domains for 6cut:
      1. 2907739Domain d6cuta_: 6cut A: [358007]
        automated match to d1v8zb_
        complexed with fej, na
      2. 2907740Domain d6cutb_: 6cut B: [357991]
        automated match to d1v8zb_
        complexed with fej, na
      3. 2907741Domain d6cutc_: 6cut C: [358086]
        automated match to d1v8zb_
        complexed with fej, na
      4. 2907742Domain d6cutd_: 6cut D: [357978]
        automated match to d1v8zb_
        complexed with fej, na
    14. Domains for 6cuv:
      1. 2907763Domain d6cuva_: 6cuv A: [358050]
        automated match to d1v8zb_
        complexed with na, po4
      2. 2907764Domain d6cuvb_: 6cuv B: [358077]
        automated match to d1v8zb_
        complexed with na, po4
      3. 2907765Domain d6cuvc_: 6cuv C: [357963]
        automated match to d1v8zb_
        complexed with na, po4
      4. 2907766Domain d6cuvd_: 6cuv D: [357964]
        automated match to d1v8zb_
        complexed with na, po4
    15. Domains for 6cuz:
      1. 2907735Domain d6cuza_: 6cuz A: [358015]
        automated match to d1v8zb_
        complexed with fev, na, po4
      2. 2907736Domain d6cuzb_: 6cuz B: [357985]
        automated match to d1v8zb_
        complexed with fev, na, po4
      3. 2907737Domain d6cuzc_: 6cuz C: [358006]
        automated match to d1v8zb_
        complexed with fev, na, po4
      4. 2907738Domain d6cuzd_: 6cuz D: [358005]
        automated match to d1v8zb_
        complexed with fev, na, po4
    16. Domains for 7rnq:
      1. 3086795Domain d7rnqd_: 7rnq D: [423112]
        Other proteins in same PDB: d7rnqb2
        automated match to d6cuva_
        complexed with llp, na, po4
      2. 3086841Domain d7rnqb1: 7rnq B:1-388 [423158]
        Other proteins in same PDB: d7rnqb2
        automated match to d6cuva_
        complexed with llp, na, po4
  9. 2907773Pyrococcus furiosus [TaxId:2261] [327480] (1 PDB entry)
  10. 2907778Salmonella typhimurium [TaxId:90371] [189633] (15 PDB entries)
    1. Domain for 1tjp:
    2. Domain for 1wbj:
    3. Domain for 2clf:
    4. Domain for 2cli:
    5. Domain for 2clk:
    6. Domain for 2cll:
    7. Domain for 2clm:
    8. Domain for 2clo:
    9. Domain for 2j9x:
    10. Domain for 2j9y:
    11. Domain for 2j9z:
    12. Domains for 2jc3:
      1. 2907792Domain d2jc3a_: 2jc3 A: [165995]
        automated match to d2bhsa1
        complexed with plp
      2. 2907793Domain d2jc3b_: 2jc3 B: [165996]
        automated match to d2bhsa1
        complexed with plp
      3. 2907794Domain d2jc3c_: 2jc3 C: [165997]
        automated match to d2bhsa1
        complexed with plp
      4. 2907795Domain d2jc3d_: 2jc3 D: [165998]
        automated match to d2bhsa1
        complexed with plp
      5. 2907796Domain d2jc3e_: 2jc3 E: [165999]
        automated match to d2bhsa1
        complexed with plp
      6. 2907797Domain d2jc3f_: 2jc3 F: [166000]
        automated match to d2bhsa1
        complexed with plp
      7. 2907798Domain d2jc3g_: 2jc3 G: [166001]
        automated match to d2bhsa1
        complexed with plp
      8. 2907799Domain d2jc3h_: 2jc3 H: [166002]
        automated match to d2bhsa1
        complexed with plp
    13. Domain for 6duc:
      • 2907791Domain d6ducb_: 6duc B: [369703]
        Other proteins in same PDB: d6duca_
        automated match to d4zqcb_
        complexed with 1d0, 2ap, cl, cs, dms, edo, f9f; mutant
    14. Domain for 6vfd:
    15. Domains for 7a20:
      1. 2907800Domain d7a20b_: 7a20 B: [394331]
        Other proteins in same PDB: d7a20a_, d7a20c_
        automated match to d4zqcb_
        complexed with 144, na
      2. 2907801Domain d7a20d_: 7a20 D: [394233]
        Other proteins in same PDB: d7a20a_, d7a20c_
        automated match to d4zqcb_
        complexed with 144, na
  11. 2907802Thale cress (Arabidopsis thaliana) [TaxId:3702] [187877] (1 PDB entry)
  12. 2907804Thermus thermophilus HB8 [TaxId:300852] [187272] (5 PDB entries)
    1. Domains for 1ve5:
      1. 2907807Domain d1ve5b_: 1ve5 B: [120014]
        Other proteins in same PDB: d1ve5a1
        automated match to d1ve5a1
        complexed with ca, plp
      2. 2907808Domain d1ve5c_: 1ve5 C: [120015]
        Other proteins in same PDB: d1ve5a1
        automated match to d1ve5a1
        complexed with ca, plp
      3. 2907809Domain d1ve5d_: 1ve5 D: [120016]
        Other proteins in same PDB: d1ve5a1
        automated match to d1ve5a1
        complexed with ca, plp
    2. Domains for 1x1q:
      1. 2907812Domain d1x1qa_: 1x1q A: [240939]
        automated match to d1v8za1
        complexed with cl
      2. 2907813Domain d1x1qb_: 1x1q B: [240940]
        automated match to d1v8za1
        complexed with cl
    3. Domain for 2eco:
    4. Domain for 2ecq:
    5. Domains for 2efy:
      1. 2907810Domain d2efya_: 2efy A: [146824]
        automated match to d1ve1a1
        complexed with 4at, plp
      2. 2907811Domain d2efyb_: 2efy B: [146825]
        automated match to d1ve1a1
        complexed with 4at, plp
  13. 2907814Thermus thermophilus [TaxId:274] [188788] (1 PDB entry)

More info for Protein automated matches from c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes

Timeline for Protein automated matches from c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes:

  • Protein automated matches from c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes first appeared in SCOPe 2.01
  • Protein automated matches from c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes appears in SCOPe 2.07