SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.79: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53685] (1 superfamily)
consists of two similar domains related by pseudo dyad; duplication
core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214

Superfamily c.79.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53686] (2 families)
Family c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53687] (9 proteins)
Protein automated matches [190054] (13 species)
not a true protein

Species:

Aeropyrum pernix [TaxId:272557] [195353] (3 PDB entries)
1. Domains for 3vsa:
  1. Domain d3vsaa_: 3vsa A: [195359]
    automated match to d1wkvb_
    complexed with mpd, plp
  2. Domain d3vsab_: 3vsa B: [195358]
    automated match to d1wkvb_
    complexed with mpd, plp
2. Domains for 3vsc:
  1. Domain d3vsca_: 3vsc A: [195356]
    automated match to d1wkvb_
    complexed with mpd, plp, sep; mutant
  2. Domain d3vscb_: 3vsc B: [195355]
    automated match to d1wkvb_
    complexed with mpd, plp, sep; mutant
3. Domains for 3vsd:
  1. Domain d3vsda_: 3vsd A: [195357]
    automated match to d1wkvb_
    complexed with mpd, oas, plp; mutant
  2. Domain d3vsdb_: 3vsd B: [195354]
    automated match to d1wkvb_
    complexed with mpd, oas, plp; mutant
Escherichia coli [TaxId:562] [187621] (3 PDB entries)
1. Domain for 2dh5:
  - Domain d2dh5a_: 2dh5 A: [163637]
    automated match to d2tysb_
    complexed with gol, plp, so4
2. Domain for 2dh6:
  - Domain d2dh6a_: 2dh6 A: [241563]
    automated match to d2dh5a_
    complexed with so4
3. Domain for 2v03:
  - Domain d2v03a_: 2v03 A: [168268]
    automated match to d2bhsa1
    complexed with cit, gol, plp
Escherichia coli [TaxId:83334] [320059] (2 PDB entries)
1. Domains for 5j43:
  1. Domain d5j43a_: 5j43 A: [320077]
    automated match to d1d6sa_
  2. Domain d5j43e_: 5j43 E: [320240]
    automated match to d1d6sa_
2. Domains for 5j5v:
  1. Domain d5j5va_: 5j5v A: [320060]
    automated match to d1d6sa_
  2. Domain d5j5vd_: 5j5v D: [320085]
    automated match to d1d6sa_
Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [188093] (3 PDB entries)
1. Domain for 1wtc:
  - Domain d1wtca_: 1wtc A: [121257]
    automated match to d1v71a1
    complexed with acp, mg, plp
2. Domain for 2zpu:
  - Domain d2zpua_: 2zpu A: [171411]
    automated match to d1v71a1
    complexed with mg, pdd
3. Domain for 2zr8:
  - Domain d2zr8a_: 2zr8 A: [171447]
    automated match to d1v71a1
    complexed with mg, pdd, ser
Francisella tularensis [TaxId:177416] [321163] (1 PDB entry)
- Domain for 5kzm:
  - Domain d5kzmb_: 5kzm B: [321164]
    Other proteins in same PDB: d5kzma_
    automated match to d2dh5a_
    complexed with act, ca
Haemophilus influenzae [TaxId:727] [189119] (3 PDB entries)
1. Domain for 3iqg:
  - Domain d3iqgx_: 3iqg X: [178554]
    automated match to d1y7la1
2. Domain for 3iqh:
  - Domain d3iqhx_: 3iqh X: [178555]
    automated match to d1y7la1
    complexed with so4
3. Domain for 3iqi:
  - Domain d3iqix_: 3iqi X: [178556]
    automated match to d1y7la1
Human (Homo sapiens) [TaxId:9606] [256281] (1 PDB entry)
- Domain for 4h27:
  - Domain d4h27a_: 4h27 A: [252369]
    automated match to d1pwha_
    complexed with so4
Pyrococcus furiosus [TaxId:186497] [279274] (16 PDB entries)
1. Domains for 5dvz:
  1. Domain d5dvza_: 5dvz A: [313790]
    automated match to d5dw0a_
    complexed with na, po4
  2. Domain d5dvzb_: 5dvz B: [313796]
    automated match to d5dw0a_
    complexed with na, po4
  3. Domain d5dvzc_: 5dvz C: [313582]
    automated match to d5dw0a_
    complexed with na, po4
  4. Domain d5dvzd_: 5dvz D: [313513]
    automated match to d5dw0a_
    complexed with na, po4
2. Domains for 5dw0:
  1. Domain d5dw0a_: 5dw0 A: [279280]
    automated match to d1v8zb_
    complexed with na, pls
  2. Domain d5dw0b_: 5dw0 B: [279278]
    automated match to d1v8zb_
    complexed with na, pls
  3. Domain d5dw0c_: 5dw0 C: [279281]
    automated match to d1v8zb_
    complexed with na, pls
  4. Domain d5dw0d_: 5dw0 D: [279282]
    automated match to d1v8zb_
    complexed with na, pls
3. Domains for 5dw3:
  1. Domain d5dw3a_: 5dw3 A: [279275]
    automated match to d1v8zb_
    complexed with na, po4, trp
  2. Domain d5dw3b_: 5dw3 B: [279279]
    automated match to d1v8zb_
    complexed with na, po4, trp
  3. Domain d5dw3c_: 5dw3 C: [279276]
    automated match to d1v8zb_
    complexed with na, po4, trp
  4. Domain d5dw3d_: 5dw3 D: [279277]
    automated match to d1v8zb_
    complexed with na, po4, trp
4. Domains for 5e0k:
  1. Domain d5e0kb_: 5e0k B: [279283]
    Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
    automated match to d1v8zb_
    complexed with po4
  2. Domain d5e0kd_: 5e0k D: [279284]
    Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
    automated match to d1v8zb_
    complexed with po4
  3. Domain d5e0kf_: 5e0k F: [279287]
    Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
    automated match to d1v8zb_
    complexed with po4
  4. Domain d5e0kh_: 5e0k H: [279290]
    Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
    automated match to d1v8zb_
    complexed with po4
  5. Domain d5e0kj_: 5e0k J: [279292]
    Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
    automated match to d1v8zb_
    complexed with po4
  6. Domain d5e0kl_: 5e0k L: [279291]
    Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
    automated match to d1v8zb_
    complexed with po4
5. Domains for 5ixj:
  1. Domain d5ixja_: 5ixj A: [321510]
    Other proteins in same PDB: d5ixjb2, d5ixjd2
    automated match to d1v8zb_
    complexed with na, thr
  2. Domain d5ixjb1: 5ixj B:1-388 [321325]
    Other proteins in same PDB: d5ixjb2, d5ixjd2
    automated match to d1v8zb_
    complexed with na, thr
  3. Domain d5ixjc_: 5ixj C: [321349]
    Other proteins in same PDB: d5ixjb2, d5ixjd2
    automated match to d1v8zb_
    complexed with na, thr
  4. Domain d5ixjd1: 5ixj D:1-388 [321422]
    Other proteins in same PDB: d5ixjb2, d5ixjd2
    automated match to d1v8zb_
    complexed with na, thr
6. Domains for 5vm5:
  1. Domain d5vm5a_: 5vm5 A: [334719]
    automated match to d5dw0a_
    complexed with 0jo, na, pls
  2. Domain d5vm5b_: 5vm5 B: [334685]
    automated match to d5dw0a_
    complexed with 0jo, na, pls
  3. Domain d5vm5c_: 5vm5 C: [334704]
    automated match to d5dw0a_
    complexed with 0jo, na, pls
  4. Domain d5vm5d_: 5vm5 D: [334814]
    automated match to d5dw0a_
    complexed with 0jo, na, pls
7. Domains for 6am7:
  1. Domain d6am7a_: 6am7 A: [352128]
    automated match to d1v8zb_
    complexed with na, po4
  2. Domain d6am7b_: 6am7 B: [352068]
    automated match to d1v8zb_
    complexed with na, po4
  3. Domain d6am7c_: 6am7 C: [352350]
    automated match to d1v8zb_
    complexed with na, po4
  4. Domain d6am7d_: 6am7 D: [352131]
    automated match to d1v8zb_
    complexed with na, po4
8. Domains for 6am8:
  1. Domain d6am8a_: 6am8 A: [352100]
    automated match to d1v8zb_
    complexed with na, plt, trp
  2. Domain d6am8b_: 6am8 B: [352101]
    automated match to d1v8zb_
    complexed with na, plt, trp
  3. Domain d6am8c_: 6am8 C: [352031]
    automated match to d1v8zb_
    complexed with na, plt, trp
  4. Domain d6am8d_: 6am8 D: [352032]
    automated match to d1v8zb_
    complexed with na, plt, trp
9. Domains for 6am9:
  1. Domain d6am9a_: 6am9 A: [352166]
    automated match to d1v8zb_
    complexed with 0jo, na, pls
  2. Domain d6am9b_: 6am9 B: [352227]
    automated match to d1v8zb_
    complexed with 0jo, na, pls
  3. Domain d6am9c_: 6am9 C: [352327]
    automated match to d1v8zb_
    complexed with 0jo, na, pls
  4. Domain d6am9d_: 6am9 D: [352310]
    automated match to d1v8zb_
    complexed with 0jo, na, pls
10. Domains for 6amc:
  1. Domain d6amca_: 6amc A: [352168]
    Other proteins in same PDB: d6amcb2
    automated match to d1v8zb_
    complexed with na
  2. Domain d6amcb1: 6amc B:1-388 [352033]
    Other proteins in same PDB: d6amcb2
    automated match to d1v8zb_
    complexed with na
  3. Domain d6amcc_: 6amc C: [352029]
    Other proteins in same PDB: d6amcb2
    automated match to d1v8zb_
    complexed with na
  4. Domain d6amcd_: 6amc D: [352345]
    Other proteins in same PDB: d6amcb2
    automated match to d1v8zb_
    complexed with na
11. Domains for 6amh:
  1. Domain d6amha_: 6amh A: [352331]
    Other proteins in same PDB: d6amhb2
    automated match to d1v8zb_
    complexed with na, pls
  2. Domain d6amhb1: 6amh B:1-388 [352213]
    Other proteins in same PDB: d6amhb2
    automated match to d1v8zb_
    complexed with na, pls
  3. Domain d6amhc_: 6amh C: [352030]
    Other proteins in same PDB: d6amhb2
    automated match to d1v8zb_
    complexed with na, pls
  4. Domain d6amhd_: 6amh D: [352336]
    Other proteins in same PDB: d6amhb2
    automated match to d1v8zb_
    complexed with na, pls
12. Domains for 6ami:
  1. Domain d6amia_: 6ami A: [352340]
    automated match to d1v8zb_
    complexed with llp, na, trp
  2. Domain d6amib_: 6ami B: [352288]
    automated match to d1v8zb_
    complexed with llp, na, trp
  3. Domain d6amic_: 6ami C: [352349]
    automated match to d1v8zb_
    complexed with llp, na, trp
  4. Domain d6amid_: 6ami D: [352341]
    automated match to d1v8zb_
    complexed with llp, na, trp
13. Domains for 6cut:
  1. Domain d6cuta_: 6cut A: [358007]
    automated match to d1v8zb_
    complexed with fej, na
  2. Domain d6cutb_: 6cut B: [357991]
    automated match to d1v8zb_
    complexed with fej, na
  3. Domain d6cutc_: 6cut C: [358086]
    automated match to d1v8zb_
    complexed with fej, na
  4. Domain d6cutd_: 6cut D: [357978]
    automated match to d1v8zb_
    complexed with fej, na
14. Domains for 6cuv:
  1. Domain d6cuva_: 6cuv A: [358050]
    automated match to d1v8zb_
    complexed with na, po4
  2. Domain d6cuvb_: 6cuv B: [358077]
    automated match to d1v8zb_
    complexed with na, po4
  3. Domain d6cuvc_: 6cuv C: [357963]
    automated match to d1v8zb_
    complexed with na, po4
  4. Domain d6cuvd_: 6cuv D: [357964]
    automated match to d1v8zb_
    complexed with na, po4
15. Domains for 6cuz:
  1. Domain d6cuza_: 6cuz A: [358015]
    automated match to d1v8zb_
    complexed with fev, na, po4
  2. Domain d6cuzb_: 6cuz B: [357985]
    automated match to d1v8zb_
    complexed with fev, na, po4
  3. Domain d6cuzc_: 6cuz C: [358006]
    automated match to d1v8zb_
    complexed with fev, na, po4
  4. Domain d6cuzd_: 6cuz D: [358005]
    automated match to d1v8zb_
    complexed with fev, na, po4
16. Domains for 7rnq:
  1. Domain d7rnqd_: 7rnq D: [423112]
    Other proteins in same PDB: d7rnqb2
    automated match to d6cuva_
    complexed with llp, na, po4
  2. Domain d7rnqb1: 7rnq B:1-388 [423158]
    Other proteins in same PDB: d7rnqb2
    automated match to d6cuva_
    complexed with llp, na, po4
Pyrococcus furiosus [TaxId:2261] [327480] (1 PDB entry)
- Domains for 5t6m:
  1. Domain d5t6ma_: 5t6m A: [327481]
    Other proteins in same PDB: d5t6mc2
    automated match to d1v8zb_
    complexed with 78u, na, po4
  2. Domain d5t6mb_: 5t6m B: [327487]
    Other proteins in same PDB: d5t6mc2
    automated match to d1v8zb_
    complexed with 78u, na, po4
  3. Domain d5t6mc1: 5t6m C:1-388 [327483]
    Other proteins in same PDB: d5t6mc2
    automated match to d1v8zb_
    complexed with 78u, na, po4
  4. Domain d5t6md_: 5t6m D: [327528]
    Other proteins in same PDB: d5t6mc2
    automated match to d1v8zb_
    complexed with 78u, na, po4
Salmonella typhimurium [TaxId:90371] [189633] (15 PDB entries)
1. Domain for 1tjp:
  - Domain d1tjpb_: 1tjp B: [119291]
    Other proteins in same PDB: d1tjpa_
    automated match to d2tysb_
    complexed with hpf, na, plp
2. Domain for 1wbj:
  - Domain d1wbjb_: 1wbj B: [120849]
    Other proteins in same PDB: d1wbja_
    automated match to d2tysb_
    complexed with g3p, na, plp
3. Domain for 2clf:
  - Domain d2clfb_: 2clf B: [146413]
    Other proteins in same PDB: d2clfa_
    automated match to d2tysb_
    complexed with f6f, na, plp
4. Domain for 2cli:
  - Domain d2clib_: 2cli B: [130577]
    Other proteins in same PDB: d2clia_
    automated match to d2tysb_
    complexed with f9f, na, plp
5. Domain for 2clk:
  - Domain d2clkb_: 2clk B: [130579]
    Other proteins in same PDB: d2clka_
    automated match to d2tysb_
    complexed with g3h, na, plp
6. Domain for 2cll:
  - Domain d2cllb_: 2cll B: [130581]
    Other proteins in same PDB: d2clla_
    automated match to d2tysb_
    complexed with f9f, na, pls
7. Domain for 2clm:
  - Domain d2clmb_: 2clm B: [130583]
    Other proteins in same PDB: d2clma_
    automated match to d2tysb_
    complexed with f6f, na, pls
8. Domain for 2clo:
  - Domain d2clob_: 2clo B: [130585]
    Other proteins in same PDB: d2cloa_
    automated match to d2tysb_
    complexed with f19, na, pls
9. Domain for 2j9x:
  - Domain d2j9xb_: 2j9x B: [147947]
    Other proteins in same PDB: d2j9xa_
    automated match to d2tysb_
    complexed with cs, dms, g3p, p1t
10. Domain for 2j9y:
  - Domain d2j9yb_: 2j9y B: [161475]
    Other proteins in same PDB: d2j9ya_
    automated match to d2tysb_
    complexed with foo, na; mutant
11. Domain for 2j9z:
  - Domain d2j9zb_: 2j9z B: [161476]
    Other proteins in same PDB: d2j9za_
    automated match to d2tysb_
    complexed with na, plp; mutant
12. Domains for 2jc3:
  1. Domain d2jc3a_: 2jc3 A: [165995]
    automated match to d2bhsa1
    complexed with plp
  2. Domain d2jc3b_: 2jc3 B: [165996]
    automated match to d2bhsa1
    complexed with plp
  3. Domain d2jc3c_: 2jc3 C: [165997]
    automated match to d2bhsa1
    complexed with plp
  4. Domain d2jc3d_: 2jc3 D: [165998]
    automated match to d2bhsa1
    complexed with plp
  5. Domain d2jc3e_: 2jc3 E: [165999]
    automated match to d2bhsa1
    complexed with plp
  6. Domain d2jc3f_: 2jc3 F: [166000]
    automated match to d2bhsa1
    complexed with plp
  7. Domain d2jc3g_: 2jc3 G: [166001]
    automated match to d2bhsa1
    complexed with plp
  8. Domain d2jc3h_: 2jc3 H: [166002]
    automated match to d2bhsa1
    complexed with plp
13. Domain for 6duc:
  - Domain d6ducb_: 6duc B: [369703]
    Other proteins in same PDB: d6duca_
    automated match to d4zqcb_
    complexed with 1d0, 2ap, cl, cs, dms, edo, f9f; mutant
14. Domain for 6vfd:
  - Domain d6vfdb_: 6vfd B: [392668]
    Other proteins in same PDB: d6vfda_
    automated match to d4zqcb_
    complexed with 1d0, cl, cs, dms, edo, ser; mutant
15. Domains for 7a20:
  1. Domain d7a20b_: 7a20 B: [394331]
    Other proteins in same PDB: d7a20a_, d7a20c_
    automated match to d4zqcb_
    complexed with 144, na
  2. Domain d7a20d_: 7a20 D: [394233]
    Other proteins in same PDB: d7a20a_, d7a20c_
    automated match to d4zqcb_
    complexed with 144, na
Thale cress (Arabidopsis thaliana) [TaxId:3702] [187877] (1 PDB entry)
- Domain for 2isq:
  - Domain d2isqa_: 2isq A: [165676]
    automated match to d1z7wa1
    complexed with plp, so4
Thermus thermophilus HB8 [TaxId:300852] [187272] (5 PDB entries)
1. Domains for 1ve5:
  1. Domain d1ve5b_: 1ve5 B: [120014]
    Other proteins in same PDB: d1ve5a1
    automated match to d1ve5a1
    complexed with ca, plp
  2. Domain d1ve5c_: 1ve5 C: [120015]
    Other proteins in same PDB: d1ve5a1
    automated match to d1ve5a1
    complexed with ca, plp
  3. Domain d1ve5d_: 1ve5 D: [120016]
    Other proteins in same PDB: d1ve5a1
    automated match to d1ve5a1
    complexed with ca, plp
2. Domains for 1x1q:
  1. Domain d1x1qa_: 1x1q A: [240939]
    automated match to d1v8za1
    complexed with cl
  2. Domain d1x1qb_: 1x1q B: [240940]
    automated match to d1v8za1
    complexed with cl
3. Domain for 2eco:
  - Domain d2ecoa_: 2eco A: [146790]
    automated match to d1ve1a1
    complexed with 4mv, plp
4. Domain for 2ecq:
  - Domain d2ecqa_: 2ecq A: [146791]
    automated match to d1ve1a1
    complexed with 3hl, plp
5. Domains for 2efy:
  1. Domain d2efya_: 2efy A: [146824]
    automated match to d1ve1a1
    complexed with 4at, plp
  2. Domain d2efyb_: 2efy B: [146825]
    automated match to d1ve1a1
    complexed with 4at, plp
Thermus thermophilus [TaxId:274] [188788] (1 PDB entry)
- Domains for 3fca:
  1. Domain d3fcaa_: 3fca A: [175681]
    automated match to d1o58a_
    complexed with zn
  2. Domain d3fcab_: 3fca B: [175682]
    automated match to d1o58a_
    complexed with zn

More info for Protein automated matches from c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes

Timeline for Protein automated matches from c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes:

Protein automated matches from c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes first appeared in SCOPe 2.01
Protein automated matches from c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes appears in SCOPe 2.07