SCOPe 2.02: Protein: Dihydrodipicolinate reductase

Lineage for Protein: Dihydrodipicolinate reductase

Root: SCOPe 2.02
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
The nucleotide-binding modes of this and the next two folds/superfamilies are similar

Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)
Family c.2.1.3: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain [51800] (22 proteins)
family members also share a common alpha+beta fold in C-terminal domain
Protein Dihydrodipicolinate reductase [51821] (3 species)

Species:

Escherichia coli [TaxId:562] [51822] (5 PDB entries)
1. Domains for 1arz:
  1. Domain d1arza1: 1arz A:4-130,A:241-273 [30059]
    Other proteins in same PDB: d1arza2, d1arzb2, d1arzc2, d1arzd2
    complexed with k, nad, pdc, po4
  2. Domain d1arzb1: 1arz B:5-130,B:241-273 [30060]
    Other proteins in same PDB: d1arza2, d1arzb2, d1arzc2, d1arzd2
    complexed with k, nad, pdc, po4
  3. Domain d1arzc1: 1arz C:3-130,C:241-273 [30061]
    Other proteins in same PDB: d1arza2, d1arzb2, d1arzc2, d1arzd2
    complexed with k, nad, pdc, po4
  4. Domain d1arzd1: 1arz D:3-130,D:241-273 [30062]
    Other proteins in same PDB: d1arza2, d1arzb2, d1arzc2, d1arzd2
    complexed with k, nad, pdc, po4
2. Domain for 1dih:
  - Domain d1diha1: 1dih A:2-130,A:241-273 [30056]
    Other proteins in same PDB: d1diha2
    complexed with ndp
3. Domain for 1dru:
  - Domain d1drua1: 1dru A:4-130,A:241-273 [30055]
    Other proteins in same PDB: d1drua2
    complexed with nad
4. Domain for 1drv:
  - Domain d1drva1: 1drv A:4-130,A:241-273 [30058]
    Other proteins in same PDB: d1drva2
    complexed with a3d
5. Domain for 1drw:
  - Domain d1drwa1: 1drw A:2-130,A:241-273 [30057]
    Other proteins in same PDB: d1drwa2
    complexed with nhd

Mycobacterium tuberculosis [TaxId:1773] [102160] (5 PDB entries)

Domains for 1c3v:
1. Domain d1c3va1: 1c3v A:501-605,A:715-745 [90411]
  Other proteins in same PDB: d1c3va2, d1c3vb2
  complexed with ndp, pdc, pg4
2. Domain d1c3vb1: 1c3v B:1001-1105,B:1215-1245 [90413]
  Other proteins in same PDB: d1c3va2, d1c3vb2
  complexed with ndp, pdc, pg4
Domains for 1p9l:
1. Domain d1p9la1: 1p9l A:1-105,A:215-245 [94393]
  Other proteins in same PDB: d1p9la2, d1p9lb2
  complexed with nad, pdc, pg4
2. Domain d1p9lb1: 1p9l B:1-105,B:215-245 [94395]
  Other proteins in same PDB: d1p9la2, d1p9lb2
  complexed with nad, pdc, pg4
Domains for 1yl5:
1. Domain d1yl5a1: 1yl5 A:2-105,A:215-245 [123617]
  Other proteins in same PDB: d1yl5a2, d1yl5b2
  automatically matched to d1c3va1
  complexed with mg
2. Domain d1yl5b1: 1yl5 B:2-105,B:215-245 [123619]
  Other proteins in same PDB: d1yl5a2, d1yl5b2
  automatically matched to d1c3va1
  complexed with mg
Domains for 1yl6:
1. Domain d1yl6a1: 1yl6 A:2-105,A:215-245 [123621]
  Other proteins in same PDB: d1yl6a2, d1yl6b2
  automatically matched to d1c3va1
  complexed with mg
2. Domain d1yl6b1: 1yl6 B:2-105,B:215-245 [123623]
  Other proteins in same PDB: d1yl6a2, d1yl6b2
  automatically matched to d1c3va1
  complexed with mg

Domains for 1yl7:

Domain d1yl7a1: 1yl7 A:2-105,A:215-245 [123625]
Other proteins in same PDB: d1yl7a2, d1yl7b2, d1yl7c2, d1yl7d2, d1yl7e2, d1yl7f2, d1yl7g2, d1yl7h2
automatically matched to d1c3va1
complexed with mg, nad

Domain d1yl7b1: 1yl7 B:2-105,B:215-245 [123627]
Other proteins in same PDB: d1yl7a2, d1yl7b2, d1yl7c2, d1yl7d2, d1yl7e2, d1yl7f2, d1yl7g2, d1yl7h2
automatically matched to d1c3va1
complexed with mg, nad

Domain d1yl7c1: 1yl7 C:2-105,C:215-245 [123629]
Other proteins in same PDB: d1yl7a2, d1yl7b2, d1yl7c2, d1yl7d2, d1yl7e2, d1yl7f2, d1yl7g2, d1yl7h2
automatically matched to d1c3va1
complexed with mg, nad

Domain d1yl7d1: 1yl7 D:2-105,D:215-245 [123631]
Other proteins in same PDB: d1yl7a2, d1yl7b2, d1yl7c2, d1yl7d2, d1yl7e2, d1yl7f2, d1yl7g2, d1yl7h2
automatically matched to d1c3va1
complexed with mg, nad

Domain d1yl7e1: 1yl7 E:2-105,E:215-245 [123633]
Other proteins in same PDB: d1yl7a2, d1yl7b2, d1yl7c2, d1yl7d2, d1yl7e2, d1yl7f2, d1yl7g2, d1yl7h2
automatically matched to d1c3va1
complexed with mg, nad

Domain d1yl7f1: 1yl7 F:2-105,F:215-245 [123635]
Other proteins in same PDB: d1yl7a2, d1yl7b2, d1yl7c2, d1yl7d2, d1yl7e2, d1yl7f2, d1yl7g2, d1yl7h2
automatically matched to d1c3va1
complexed with mg, nad

Domain d1yl7g1: 1yl7 G:2-105,G:215-245 [123637]
Other proteins in same PDB: d1yl7a2, d1yl7b2, d1yl7c2, d1yl7d2, d1yl7e2, d1yl7f2, d1yl7g2, d1yl7h2
automatically matched to d1c3va1
complexed with mg, nad

Domain d1yl7h1: 1yl7 H:2-105,H:215-245 [123639]
Other proteins in same PDB: d1yl7a2, d1yl7b2, d1yl7c2, d1yl7d2, d1yl7e2, d1yl7f2, d1yl7g2, d1yl7h2
automatically matched to d1c3va1
complexed with mg, nad

Thermotoga maritima [TaxId:2336] [110417] (1 PDB entry)
Uniprot Q9X1K8
- Domains for 1vm6:
  1. Domain d1vm6a3: 1vm6 A:1-96,A:183-214 [118631]
    Other proteins in same PDB: d1vm6a2, d1vm6b2, d1vm6c2, d1vm6d2
    Structural genomics target
    complexed with act, edo, nad, pg4
  2. Domain d1vm6b1: 1vm6 B:1-96,B:183-213 [108878]
    Other proteins in same PDB: d1vm6a2, d1vm6b2, d1vm6c2, d1vm6d2
    Structural genomics target
    complexed with act, edo, nad, pg4
  3. Domain d1vm6c3: 1vm6 C:1-96,C:183-214 [118632]
    Other proteins in same PDB: d1vm6a2, d1vm6b2, d1vm6c2, d1vm6d2
    Structural genomics target
    complexed with act, edo, nad, pg4
  4. Domain d1vm6d1: 1vm6 D:1-96,D:183-213 [108882]
    Other proteins in same PDB: d1vm6a2, d1vm6b2, d1vm6c2, d1vm6d2
    Structural genomics target
    complexed with act, edo, nad, pg4

More info for Protein Dihydrodipicolinate reductase from c.2.1.3: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain

Timeline for Protein Dihydrodipicolinate reductase from c.2.1.3: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain:

Protein Dihydrodipicolinate reductase from c.2.1.3: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain first appeared (with stable ids) in SCOP 1.55
Protein Dihydrodipicolinate reductase from c.2.1.3: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain appears in SCOPe 2.01
Protein Dihydrodipicolinate reductase from c.2.1.3: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain appears in SCOPe 2.03
Protein Dihydrodipicolinate reductase from c.2.1.3: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain appears in the current release, SCOPe 2.08