Lineage for d2bdpa2 (2bdp A:469-876)

  1. Root: SCOP 1.67
  2. 423625Class e: Multi-domain proteins (alpha and beta) [56572] (40 folds)
  3. 424451Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 424452Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 424453Family e.8.1.1: DNA polymerase I [56673] (3 proteins)
  6. 424454Protein DNA polymerase I (Klenow fragment) [56674] (3 species)
  7. 424455Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] [56677] (24 PDB entries)
  8. 424473Domain d2bdpa2: 2bdp A:469-876 [43002]
    Other proteins in same PDB: d2bdpa1
    protein/DNA complex; complexed with mg, so4

Details for d2bdpa2

PDB Entry: 2bdp (more details), 1.8 Å

PDB Description: crystal structure of bacillus dna polymerase i fragment complexed to 9 base pairs of duplex dna

SCOP Domain Sequences for d2bdpa2:

Sequence; same for both SEQRES and ATOM records: (download)

>d2bdpa2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment) {Bacillus stearothermophilus, newly identified strain as yet unnamed}
eqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefni
nspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyi
egllkvvrpdtkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwl
ifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakav
nfgivygisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllh
rrrylpditsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqv
hdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak

SCOP Domain Coordinates for d2bdpa2:

Click to download the PDB-style file with coordinates for d2bdpa2.
(The format of our PDB-style files is described here.)

Timeline for d2bdpa2:

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Domains from same chain:
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d2bdpa1