SCOP 1.63: Domain d1kfd_2: 1kfd 519-928

Lineage for d1kfd_2 (1kfd 519-928)

1. Root: SCOP 1.63

2. Class e: Multi-domain proteins (alpha and beta) [56572] (39 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (3 proteins)

6. Protein DNA polymerase I (Klenow fragment) [56674] (3 species)

7. Species Escherichia coli [TaxId:562] [56675] (14 PDB entries)

8. Domain d1kfd_2: 1kfd 519-928 [42987]
   Other proteins in same PDB: d1kfd_1
   complexed with ctp

Details for d1kfd_2

PDB Entry: 1kfd, 3.9 Å

PDB Description: crystal structures of the klenow fragment of dna polymerase i complexed with deoxynucleoside triphosphate and pyrophosphate

SCOP Domain Sequences for d1kfd_2:

Sequence, based on SEQRES records:

>d1kfd_2 e.8.1.1 (519-928) DNA polymerase I (Klenow fragment) {Escherichia coli}
hkgplnvfeniemplvpvlsrierngvkidpkvlhnhseeltlrlaelekkaheiageef
nlsstkqlqtilfekqgikplkktpggapstseevleelaldyplpkvileyrglaklks
tytdklplminpktgrvhtsyhqavtatgrlsstdpnlqnipvrneegrrirqafiaped
yvivsadysqielrimahlsrdkglltafaegkdihrataaevfglpletvtseqrrsak
ainfgliygmsafglarqlniprkeaqkymdlyferypgvleymertraqakeqgyvetl
dgrrlylpdikssngarraaaeraainapmqgtaadiikramiavdawlqaeqprvrmim
qvhdelvfevhkddvdavakqihqlmenctrldvpllvevgsgenwdqah

Sequence, based on observed residues (ATOM records):

>d1kfd_2 e.8.1.1 (519-928) DNA polymerase I (Klenow fragment) {Escherichia coli}
hkgplnvfeniemplvpvlsrierngvkidpkvlhnhseeltlrlaelekkaheiadypl
pkvileyrglaklkstytdklplminpktgrvhtsyhqavtatgrlsstdpnlqnipvrn
eegrrirqafiapedyvivsadysqielrimahlsrdkglltafaegkdihrataaevfg
lpletvtseqrrsakainfgliygmsafglarqlniprkeaqkymdlyferypgvleyme
rtraqakeqgyvetldgrrlylpdikssngarraaaeraainapmqgtaadiikramiav
dawlqaeqprvrmimqvhdelvfevhkddvdavakqihqlmenctrldvpllvevgsgen
wdqah

Timeline for d1kfd_2:

• d1kfd_2 first appeared (with stable ids) in SCOP 1.55
  
• d1kfd_2 appears in SCOP 1.61
  
• d1kfd_2 appears in SCOP 1.65
  
• d1kfd_2 appears in the current release, SCOPe 2.08, called d1kfda2