SCOPe 2.06: Domain d1ehib2: 1ehi B:535-770

Lineage for d1ehib2 (1ehi B:535-770)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.142: ATP-grasp [56058] (2 superfamilies)
   Consists of two subdomains with different alpha+beta folds
   shares functional and structural similarities with the PIPK and protein kinase superfamilies

4. Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (11 families)

5. Family d.142.1.1: ATP-binding domain of peptide synthetases [56060] (4 proteins)

6. Protein D-alanine:D-lactate ligase VanA, C-domain [56065] (2 species)

7. Species Leuconostoc mesenteroides, Ddl2 [TaxId:1245] [56066] (1 PDB entry)

8. Domain d1ehib2: 1ehi B:535-770 [41485]
   Other proteins in same PDB: d1ehia1, d1ehib1
   complexed with adp, mg, phy

Details for d1ehib2

PDB Entry: 1ehi, 2.38 Å

PDB Description: d-alanine:d-lactate ligase (lmddl2) of vancomycin-resistant leuconostoc mesenteroides

PDB Compounds: (B:) d-alanine:d-lactate ligase

SCOPe Domain Sequences for d1ehib2:

Sequence, based on SEQRES records:

>d1ehib2 d.142.1.1 (B:535-770) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
dkaltkelltvngirntkyivvdpesannwswdkivaelgnivfvkaanqgssvgisrvt
naeeytealsdsfqydykvlieeavngarelevgvigndqplvseigahtvpnqgsgdgw
ydynnkfvdnsavhfqipaqlspevtkevkqmaldaykvlnlrgearmdflldennvpyl
gepntlpgftnmslfkrlwdysdinnaklvdmlidygfedfaqnkklsysfvslge

Sequence, based on observed residues (ATOM records):

>d1ehib2 d.142.1.1 (B:535-770) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
dkaltkelltvngirntkyivvdpesannwswdkivaelgnivfvkaanqgssvgisrvt
naeeytealsdsfqydykvlieeavngarelevgvigndqplvseigahtvhfqipaqls
pevtkevkqmaldaykvlnlrgearmdflldennvpylgepntlpgftnmslfkrlwdys
dinnaklvdmlidygfedfaqnkklsysfvslge

Timeline for d1ehib2:

• d1ehib2 first appeared (with stable ids) in SCOP 1.55
  
• d1ehib2 appears in SCOPe 2.05
  
• d1ehib2 appears in SCOPe 2.07
  
• d1ehib2 appears in the current release, SCOPe 2.08