SCOPe 2.01: Domain d1avza_: 1avz A:

Lineage for d1avza_ (1avz A:)

1. Root: SCOPe 2.01

2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)

3. Fold d.102: Regulatory factor Nef [55670] (1 superfamily)
   alpha(2)-beta(4)-alpha; 3 layers: alpha/beta/alpha

4. Superfamily d.102.1: Regulatory factor Nef [55671] (2 families)

5. Family d.102.1.1: Regulatory factor Nef [55672] (2 proteins)

6. Protein Regulatory factor Nef [55673] (1 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [55674] (4 PDB entries)

8. Domain d1avza_: 1avz A: [40701]
   Other proteins in same PDB: d1avzc_

Details for d1avza_

PDB Entry: 1avz, 3 Å

PDB Description: v-1 nef protein in complex with wild type fyn sh3 domain

PDB Compounds: (A:) negative factor

SCOPe Domain Sequences for d1avza_:

Sequence, based on SEQRES records:

>d1avza_ d.102.1.1 (A:) Regulatory factor Nef {Human immunodeficiency virus type 1 [TaxId: 11676]}
vplrpmtykaavdlshflkekggleglihsqrrqdildlwiyhtqgyfpdwqnytpgpgv
rypltfgwcyklvpvepdkveeankgentsllhpvslhgmddperevlewrfdsrlafhh
varelhpeyf

Sequence, based on observed residues (ATOM records):

>d1avza_ d.102.1.1 (A:) Regulatory factor Nef {Human immunodeficiency virus type 1 [TaxId: 11676]}
vplrpmtykaavdlshflkekggleglihsqrrqdildlwiyhtqgyfpdwqnytpgpgv
rypltfgwcyklvpvevlewrfdsrlafhhvarelhpeyf

Timeline for d1avza_:

• d1avza_ first appeared (with stable ids) in SCOP 1.55
  
• d1avza_ appears in SCOP 1.75
  
• d1avza_ appears in SCOPe 2.02
  
• d1avza_ appears in the current release, SCOPe 2.08