SCOPe 2.08: Domain d1cmxa_: 1cmx A:

Lineage for d1cmxa_ (1cmx A:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.3: Cysteine proteinases [54000] (1 superfamily)
   consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn

4. Superfamily d.3.1: Cysteine proteinases [54001] (24 families)
   the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet

5. Family d.3.1.6: Ubiquitin carboxyl-terminal hydrolase UCH-L [54050] (3 proteins)
   automatically mapped to Pfam PF01088

6. Protein Ubiquitin carboxyl-terminal hydrolase UCH-l3 [54051] (2 species)

7. Species Synthetic, based on Saccharomyces cerevisiae sequence [54053] (1 PDB entry)

8. Domain d1cmxa_: 1cmx A: [37130]
   Other proteins in same PDB: d1cmxb_, d1cmxd_

Details for d1cmxa_

PDB Entry: 1cmx, 2.25 Å

PDB Description: structural basis for the specificity of ubiquitin c-terminal hydrolases

PDB Compounds: (A:) protein (ubiquitin yuh1-ubal)

SCOPe Domain Sequences for d1cmxa_:

Sequence, based on SEQRES records:

>d1cmxa_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Synthetic, based on Saccharomyces cerevisiae sequence}
ravvpiesnpevftnfahklglknewayfdiysltepellaflprpvkaivllfpinedr
ksstsqqitssydviwfkqsvknacglyailhslsnnqsllepgsdldnflksqsdtsss
knrfddvttdqfvlnvikenvqtfstgqseapeatadtnlhyityveenggifeldgrnl
sgplylgksdptatdlieqelvrvrvasymenaneedvlnfamlglgpn

Sequence, based on observed residues (ATOM records):

>d1cmxa_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Synthetic, based on Saccharomyces cerevisiae sequence}
ravvpiesnpevftnfahklglknewayfdiysltepellaflprpvkaivllfpindvi
wfkqsvknacglyailhslsnnqsllepgsdldnflksqsdtsssknrfddvttdqfvln
vikenvqtfstgqseapeatadtnlhyityveenggifeldgrnlsgplylgksdptatd
lieqelvrvrvasymenaneedvlnfamlglgpn

Timeline for d1cmxa_:

• d1cmxa_ first appeared (with stable ids) in SCOP 1.55
  
• d1cmxa_ appears in SCOPe 2.07