Lineage for d5jcbf2 (5jcb F:77-378)

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2541368Fold d.142: ATP-grasp [56058] (2 superfamilies)
    Consists of two subdomains with different alpha+beta folds
    shares functional and structural similarities with the PIPK and protein kinase superfamilies
  4. 2541369Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (11 families) (S)
  5. 2541719Family d.142.1.10: Tubulin tyrosine ligase (TTL) C-terminal domain-like [310626] (2 proteins)
    Pfam PF03133; PubMed 22020298
  6. 2541720Protein Tubulin tyrosine ligase (TTL) C-terminal domain [310728] (3 species)
  7. 2541721Species Chicken (Gallus gallus) [TaxId:9031] [311385] (79 PDB entries)
  8. 2541748Domain d5jcbf2: 5jcb F:77-378 [344287]
    Other proteins in same PDB: d5jcba1, d5jcba2, d5jcbb1, d5jcbb2, d5jcbc1, d5jcbc2, d5jcbd1, d5jcbd2, d5jcbe_, d5jcbf1
    complexed with acp, ca, gdp, gol, gtp, imd, mes, mg, na, nv4, peg

Details for d5jcbf2

PDB Entry: 5jcb (more details), 2.3 Å

PDB Description: microtubule depolymerizing agent podophyllotoxin derivative yjtsf1
PDB Compounds: (F:) Tubulin-tyrosine ligase

SCOPe Domain Sequences for d5jcbf2:

Sequence, based on SEQRES records: (download)

>d5jcbf2 d.142.1.10 (F:77-378) Tubulin tyrosine ligase (TTL) C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
lvkliktspelsesctwfpesyviyptnlktpvapaqngirhlinntrtderevflaayn
rrregregnvwiakssagakgegilisseaselldfideqgqvhviqkylekplllepgh
rkfdirswvlvdhlyniylyregvlrtssepynsanfqdktchltnhciqkeysknygry
eegnemffeefnqylmdalnttlensillqikhiirsclmciepaistkhlhyqsfqlfg
fdfmvdeelkvwlievngapacaqklyaelcqgivdvaissvfpladtgqktsqptsifi
kl

Sequence, based on observed residues (ATOM records): (download)

>d5jcbf2 d.142.1.10 (F:77-378) Tubulin tyrosine ligase (TTL) C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
lvkliktspelsctwfpesyiypderevflaayngnvwiaksisseaselldfihviqky
lekplllepghrkfdirswvlvdhlyniylyregvlrtssepynsaktchltnhciqkey
ygryeegnemffeefnqylmdalnttlensillqikhiirsclmciepaistkhlhyqsf
qlfgfdfmvdeelkvwlievngapacaqklyaelcqgivdvaissvfplasifikl

SCOPe Domain Coordinates for d5jcbf2:

Click to download the PDB-style file with coordinates for d5jcbf2.
(The format of our PDB-style files is described here.)

Timeline for d5jcbf2:

  • d5jcbf2 is new in SCOPe 2.07-stable