SCOPe 2.08: Domain d5jcbb1: 5jcb B:2-245

Lineage for d5jcbb1 (5jcb B:2-245)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.32: Tubulin nucleotide-binding domain-like [52489] (1 superfamily)
   3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456

4. Superfamily c.32.1: Tubulin nucleotide-binding domain-like [52490] (2 families)
   automatically mapped to Pfam PF00091

5. Family c.32.1.1: Tubulin, GTPase domain [52491] (4 proteins)

6. Protein automated matches [226837] (9 species)
   not a true protein

7. Species Pig (Sus scrofa) [TaxId:9823] [278808] (66 PDB entries)

8. Domain d5jcbb1: 5jcb B:2-245 [339500]
   Other proteins in same PDB: d5jcba2, d5jcbb2, d5jcbc2, d5jcbd2, d5jcbe_, d5jcbf1, d5jcbf2
   automated match to d4drxb1
   complexed with acp, ca, gdp, gol, gtp, imd, mes, mg, na, nv4, peg

Details for d5jcbb1

PDB Entry: 5jcb, 2.3 Å

PDB Description: microtubule depolymerizing agent podophyllotoxin derivative yjtsf1

PDB Compounds: (B:) Tubulin beta chain

SCOPe Domain Sequences for d5jcbb1:

Sequence, based on SEQRES records:

>d5jcbb1 c.32.1.1 (B:2-245) automated matches {Pig (Sus scrofa) [TaxId: 9823]}
reivhiqagqcgnqigakfwevisdehgidptgsyhgdsdlqlerinvyyneatgnkyvp
railvdlepgtmdsvrsgpfgqifrpdnfvfgqsgagnnwakghytegaelvdsvldvvr
kesescdclqgfqlthslgggtgsgmgtlliskireeypdrimntfsvmpspkvsdtvve
pynatlsvhqlventdetycidnealydicfrtlklttptygdlnhlvsatmsgvttclr
fp

Sequence, based on observed residues (ATOM records):

>d5jcbb1 c.32.1.1 (B:2-245) automated matches {Pig (Sus scrofa) [TaxId: 9823]}
reivhiqagqcgnqigakfwevisdehgidptgsyhgdsdlqlerinvyynegnkyvpra
ilvdlepgtmdsvrsgpfgqifrpdnfvfgqsgagnnwakghytegaelvdsvldvvrke
sescdclqgfqlthslgggtgsgmgtlliskireeypdrimntfsvmpspkvsdtvvepy
natlsvhqlventdetycidnealydicfrtlklttptygdlnhlvsatmsgvttclrfp

Timeline for d5jcbb1:

• d5jcbb1 first appeared in SCOPe 2.06
  
• d5jcbb1 appears in SCOPe 2.07