SCOPe 2.08: Domain d5jcbb2: 5jcb B:246-438

Lineage for d5jcbb2 (5jcb B:246-438)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
   core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest

4. Superfamily d.79.2: Tubulin C-terminal domain-like [55307] (2 families)

5. Family d.79.2.1: Tubulin, C-terminal domain [55308] (4 proteins)

6. Protein automated matches [227071] (7 species)
   not a true protein

7. Species Pig (Sus scrofa) [TaxId:9823] [278816] (66 PDB entries)

8. Domain d5jcbb2: 5jcb B:246-438 [339501]
   Other proteins in same PDB: d5jcba1, d5jcbb1, d5jcbc1, d5jcbd1, d5jcbe_, d5jcbf1, d5jcbf2
   automated match to d3rycd2
   complexed with acp, ca, gdp, gol, gtp, imd, mes, mg, na, nv4, peg

Details for d5jcbb2

PDB Entry: 5jcb, 2.3 Å

PDB Description: microtubule depolymerizing agent podophyllotoxin derivative yjtsf1

PDB Compounds: (B:) Tubulin beta chain

SCOPe Domain Sequences for d5jcbb2:

Sequence, based on SEQRES records:

>d5jcbb2 d.79.2.1 (B:246-438) automated matches {Pig (Sus scrofa) [TaxId: 9823]}
gqlnadlrklavnmvpfprlhffmpgfapltsrgsqqyraltvpeltqqmfdsknmmaac
dprhgryltvaaifrgrmsmkevdeqmlnvqnknssyfvewipnnvktavcdipprglkm
satfignstaiqelfkriseqftamfrrkaflhwytgegmdemefteaesnmndlvseyq
qyqda

Sequence, based on observed residues (ATOM records):

>d5jcbb2 d.79.2.1 (B:246-438) automated matches {Pig (Sus scrofa) [TaxId: 9823]}
gqlnadlrklavnmvpfprlhffmpgfapltssqqyraltvpeltqqmfdsknmmaacdp
rhgryltvaaifrgrmsmkevdeqmlnvqnknssyfvewipnnvktavcdipprglkmsa
tfignstaiqelfkriseqftamfrrkaflhwytgegmdemefteaesnmndlvseyqqy
qda

Timeline for d5jcbb2:

• d5jcbb2 first appeared in SCOPe 2.06
  
• d5jcbb2 appears in SCOPe 2.07