Lineage for d5xl9c1 (5xl9 C:5-323)

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2385148Fold b.19: Viral protein domain [49817] (1 superfamily)
    sandwich; 9 strands in 2 sheets; jelly-roll; form trimers
  4. 2385149Superfamily b.19.1: Viral protein domain [49818] (4 families) (S)
    forms homotrimers
  5. 2385894Family b.19.1.0: automated matches [227246] (1 protein)
    not a true family
  6. 2385895Protein automated matches [227017] (57 species)
    not a true protein
  7. 2386073Species Influenza A virus (strain a/duck/czechoslovakia/1956 h4n6) [TaxId:385590] [337300] (12 PDB entries)
  8. 2386095Domain d5xl9c1: 5xl9 C:5-323 [337370]
    Other proteins in same PDB: d5xl9a2, d5xl9b2, d5xl9c2
    automated match to d1ha0a1
    complexed with nag, sia; mutant

Details for d5xl9c1

PDB Entry: 5xl9 (more details), 2.39 Å

PDB Description: the structure of hemagglutinin g228s mutant from an avian-origin h4n6 influenza virus in complex with avian receptor analog lsta
PDB Compounds: (C:) Hemagglutinin

SCOPe Domain Sequences for d5xl9c1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5xl9c1 b.19.1.0 (C:5-323) automated matches {Influenza A virus (strain a/duck/czechoslovakia/1956 h4n6) [TaxId: 385590]}
gnpvicmghhavangtmvktladdqvevvtaqelvesqnlpelcpsplrlvdgqtcdiin
galgspgcdhlngaewdvfierpnavdtcypfdvpeyqslrsilanngkfefiaeefqwn
tvkqngksgackranvndffnrlnwlvksdgnayplqnltkinngdyarlyiwgvhhpst
dteqtnlyknnpggvtvstktsqtsvvpnigsrplvrgqssrvsfywtivepgdlivfnt
ignliaprghyklnnqkkstilntaipigscvskchtdkgslsttkpfqnisriavgdcp
ryvkqgslklatgmrnipe

SCOPe Domain Coordinates for d5xl9c1:

Click to download the PDB-style file with coordinates for d5xl9c1.
(The format of our PDB-style files is described here.)

Timeline for d5xl9c1:

2386095
d5xl9c1 in context of chain
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Domains from same chain:
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d5xl9c2