Lineage for d5g5ka1 (5g5k A:1-332)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2413227Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2416558Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2418840Family c.1.8.0: automated matches [191314] (1 protein)
    not a true family
  6. 2418841Protein automated matches [190075] (93 species)
    not a true protein
  7. 2419345Species Pseudomonas aeruginosa [TaxId:208964] [332878] (7 PDB entries)
  8. 2419358Domain d5g5ka1: 5g5k A:1-332 [334632]
    Other proteins in same PDB: d5g5ka2
    automated match to d3gs6a_
    complexed with nok

Details for d5g5ka1

PDB Entry: 5g5k (more details), 3.1 Å

PDB Description: crystal structure of nagz from pseudomonas aeruginosa in complex with the inhibitor 2-acetamido-1,2-dideoxynojirimycin
PDB Compounds: (A:) Beta-hexosaminidase

SCOPe Domain Sequences for d5g5ka1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5g5ka1 c.1.8.0 (A:1-332) automated matches {Pseudomonas aeruginosa [TaxId: 208964]}
mqgslmldiggtwltaedrqilrhpevggliifarniehpaqvrelcaairairpdllla
vdqeggrvqrlrqgfvrlpamraiadnpnaeelaehcgwlmatevqavgldlsfapvldl
dhqrsavvgsrafegdperaallagafirgmhaagmaatgkhfpghgwaeadshvaiped
arsleeirrsdlvpfarlagqldalmpahviypqvdpqpagfsrrwlqeilrgelkfdgv
ifsddlsmagahvvgdaasrieaalaagcdmglvcndrasaelalaalqrlkvtppsrlq
rmrgkgyantdyrqqprwlealsalraaqlid

SCOPe Domain Coordinates for d5g5ka1:

Click to download the PDB-style file with coordinates for d5g5ka1.
(The format of our PDB-style files is described here.)

Timeline for d5g5ka1:

View in 3D
Domains from same chain:
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d5g5ka2
View in 3D
Domains from other chains:
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d5g5kb_