SCOPe 2.08: Family c.1.8.0: automated matches

Lineage for Family c.1.8.0: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)
Family c.1.8.0: automated matches [191314] (1 protein)
not a true family

Protein:

automated matches [190075] (132 species)
not a true protein
1. Species Acremonium chrysogenum [TaxId:857340] [346629] (1 PDB entry)
2. Species Aegilops speltoides [TaxId:58531] [312722] (1 PDB entry)
3. Species Agrobacterium tumefaciens [TaxId:1453998] [375846] (4 PDB entries)
4. Species Alicyclobacillus herbarius [TaxId:122960] [401325] (1 PDB entry)
5. Species Amycolatopsis orientalis [TaxId:31958] [255631] (4 PDB entries)
6. Species Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [189358] (1 PDB entry)
7. Species Aplysia kurodai [TaxId:6501] [194466] (1 PDB entry)
8. Species Aspergillus aculeatus [TaxId:690307] [371307] (2 PDB entries)
9. Species Aspergillus fumigatus [TaxId:1437362] [385731] (6 PDB entries)
10. Species Aspergillus fumigatus [TaxId:330879] [189460] (1 PDB entry)
11. Species Aspergillus fumigatus [TaxId:451804] [189778] (3 PDB entries)
12. Species Aspergillus fumigatus [TaxId:5085] [189545] (2 PDB entries)
13. Species Aspergillus niger [TaxId:425011] [333178] (6 PDB entries)
14. Species Bacillus agaradhaerens [TaxId:76935] [231408] (2 PDB entries)
15. Species Bacillus anthracis [TaxId:198094] [188951] (1 PDB entry)
16. Species Bacillus clarkii [TaxId:79879] [256320] (1 PDB entry)
17. Species Bacillus licheniformis [TaxId:1402] [396176] (1 PDB entry)
18. Species Bacillus licheniformis [TaxId:279010] [312605] (2 PDB entries)
19. Species Bacillus sp. [TaxId:1409] [356870] (6 PDB entries)
20. Species Bacillus subtilis [TaxId:224308] [226199] (3 PDB entries)
21. Species Bacteroides ovatus [TaxId:28116] [319143] (1 PDB entry)
22. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188036] (5 PDB entries)
23. Species Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId:5306] [225236] (2 PDB entries)
24. Species Bispora sp. [TaxId:554688] [349356] (2 PDB entries)
25. Species Butyrivibrio proteoclasticus [TaxId:515622] [311401] (1 PDB entry)
26. Species Caldanaerobacter subterraneus [TaxId:911092] [404127] (1 PDB entry)
27. Species Caldicellulosiruptor bescii [TaxId:521460] [256973] (6 PDB entries)
28. Species Caldicellulosiruptor owensensis [TaxId:632518] [348704] (1 PDB entry)
29. Species Caldicellulosiruptor sp. [TaxId:1214564] [311461] (2 PDB entries)
30. Species Caldicellulosiruptor sp. [TaxId:1387557] [367992] (1 PDB entry)
31. Species Cellvibrio japonicus [TaxId:498211] [256228] (2 PDB entries)
32. Species Clostridioides difficile [TaxId:1496] [392335] (2 PDB entries)
33. Species Clostridium acetobutylicum [TaxId:272562] [391198] (1 PDB entry)
34. Species Clostridium cellulovorans [TaxId:1493] [311320] (3 PDB entries)
35. Species Clostridium longisporum [TaxId:1523] [391178] (1 PDB entry)
36. Species Clostridium perfringens [TaxId:195102] [267956] (2 PDB entries)
37. Species Clostridium stercorarium [TaxId:1510] [187615] (1 PDB entry)
38. Species Clostridium thermocellum [TaxId:1515] [267951] (1 PDB entry)
39. Species Clostridium thermocellum [TaxId:203119] [269902] (4 PDB entries)
40. Species Cryptomeria japonica [TaxId:3369] [384975] (1 PDB entry)
41. Species Cryptopygus antarcticus [TaxId:187623] [258696] (2 PDB entries)
42. Species Cytophaga hutchinsonii [TaxId:269798] [318773] (1 PDB entry)
43. Species Dictyoglomus thermophilum [TaxId:309799] [389552] (1 PDB entry)
44. Species Escherichia coli K-12 [TaxId:83333] [193700] (19 PDB entries)
45. Species Escherichia coli [TaxId:562] [399550] (1 PDB entry)
46. Species Escherichia coli [TaxId:83333] [272137] (17 PDB entries)
47. Species Eubacterium eligens [TaxId:515620] [420003] (3 PDB entries)
48. Species Exiguobacterium antarcticum [TaxId:1087448] [315226] (2 PDB entries)
49. Species Faecalibacterium prausnitzii [TaxId:411483] [364813] (1 PDB entry)
50. Species Faecalibacterium prausnitzii [TaxId:853] [376260] (1 PDB entry)
51. Species Fall armyworm (Spodoptera frugiperda) [TaxId:7108] [279776] (1 PDB entry)
52. Species Fervidobacterium nodosum [TaxId:381764] [233452] (2 PDB entries)
53. Species Fervidobacterium pennivorans [TaxId:771875] [388855] (2 PDB entries)
54. Species Fungus (Aspergillus oryzae) [TaxId:5062] [256307] (3 PDB entries)
55. Species Fungus (Fusarium oxysporum) [TaxId:5507] [194927] (1 PDB entry)
56. Species Geobacillus sp. [TaxId:258999] [225393] (1 PDB entry)
57. Species Geobacillus sp. [TaxId:575526] [311783] (1 PDB entry)
58. Species Geobacillus stearothermophilus [TaxId:1422] [319127] (16 PDB entries)
59. Species Goat (Capra hircus) [TaxId:9925] [313362] (1 PDB entry)
60. Species Halothermothrix orenii [TaxId:373903] [256095] (4 PDB entries)
61. Species Human (Homo sapiens) [TaxId:9606] [226772] (2 PDB entries)
62. Species Humicola grisea [TaxId:5528] [257077] (2 PDB entries)
63. Species Hungateiclostridium cellulolyticum [TaxId:35830] [376762] (1 PDB entry)
64. Species Hypocrea jecorina [TaxId:51453] [267875] (1 PDB entry)
65. Species Ipomoea carnea [TaxId:89640] [360421] (1 PDB entry)
66. Species Kribbella flavida [TaxId:479435] [402436] (2 PDB entries)
67. Species Lactobacillus acidophilus [TaxId:272621] [226447] (1 PDB entry)
68. Species Lactobacillus plantarum [TaxId:1590] [189663] (4 PDB entries)
69. Species Lactobacillus plantarum [TaxId:220668] [193494] (1 PDB entry)
70. Species Lactobacillus rhamnosus [TaxId:47715] [364803] (1 PDB entry)
71. Species Malbranchea cinnamomea [TaxId:5041] [226682] (1 PDB entry)
72. Species Marine metagenome [TaxId:408172] [355785] (2 PDB entries)
73. Species Micrococcus antarcticus [TaxId:86171] [256149] (1 PDB entry)
74. Species Muricauda sp. [TaxId:1250232] [379088] (1 PDB entry)
75. Species Neotermes koshunensis [TaxId:60586] [189411] (13 PDB entries)
76. Species Oryza sativa [TaxId:39946] [267953] (5 PDB entries)
77. Species Oryza sativa [TaxId:39947] [225407] (30 PDB entries)
78. Species Paenibacillus barcinonensis [TaxId:198119] [273460] (1 PDB entry)
79. Species Paenibacillus macerans [TaxId:44252] [256319] (4 PDB entries)
80. Species Paenibacillus pabuli [TaxId:1472] [419817] (2 PDB entries)
81. Species Paenibacillus polymyxa [TaxId:1406] [187337] (5 PDB entries)
82. Species Paenibacillus sp. [TaxId:324057] [193799] (3 PDB entries)
83. Species Penicillium canescens [TaxId:5083] [195263] (1 PDB entry)
84. Species Piromyces rhizinflatus [TaxId:73428] [311273] (2 PDB entries)
85. Species Potato (Solanum tuberosum) [TaxId:4113] [193294] (4 PDB entries)
86. Species Prevotella bryantii [TaxId:77095] [276992] (6 PDB entries)
87. Species Pseudomonas aeruginosa [TaxId:208964] [332878] (7 PDB entries)
88. Species Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId:155077] [225524] (4 PDB entries)
89. Species Pseudomonas stutzeri [TaxId:379731] [257915] (2 PDB entries)
90. Species Pyrococcus furiosus [TaxId:2261] [267914] (1 PDB entry)
91. Species Rauvolfia serpentina [TaxId:4060] [189830] (12 PDB entries)
92. Species Rhizomucor miehei [TaxId:4839] [256971] (7 PDB entries)
93. Species Rice (Oryza sativa) [TaxId:4530] [226130] (3 PDB entries)
94. Species Ruminiclostridium thermocellum [TaxId:203119] [355512] (1 PDB entry)
95. Species Ruminococcus champanellensis [TaxId:1161942] [396145] (2 PDB entries)
96. Species Ruminococcus flavefaciens [TaxId:1265] [396470] (1 PDB entry)
97. Species Ruminococcus gnavus [TaxId:33038] [361249] (8 PDB entries)
98. Species Salmonella enterica [TaxId:99287] [194211] (5 PDB entries)
99. Species Scadoxus multiflorus [TaxId:82246] [188826] (7 PDB entries)
100. Species Sodiomyces alcalophilus [TaxId:398408] [420087] (1 PDB entry)
101. Species Soil metagenome [TaxId:410658] [328506] (1 PDB entry)
102. Species Streptococcus agalactiae [TaxId:208435] [278390] (2 PDB entries)
103. Species Streptococcus mutans [231714] (2 PDB entries)
104. Species Streptococcus mutans [TaxId:1309] [195139] (3 PDB entries)
105. Species Streptococcus mutans [TaxId:210007] [194595] (4 PDB entries)
106. Species Streptococcus pneumoniae [TaxId:170187] [196905] (2 PDB entries)
107. Species Streptococcus pyogenes [TaxId:1314] [226551] (2 PDB entries)
108. Species Streptococcus pyogenes [TaxId:160490] [314579] (1 PDB entry)
109. Species Sulfolobus tokodaii [TaxId:273063] [225871] (1 PDB entry)
110. Species Talaromyces trachyspermus [TaxId:28566] [258596] (1 PDB entry)
111. Species Tamarindus indica [TaxId:58860] [197290] (2 PDB entries)
112. Species Thermoanaerobacterium saccharolyticum [TaxId:1094508] [196751] (6 PDB entries)
113. Species Thermobacillus composti [TaxId:377615] [403997] (1 PDB entry)
114. Species Thermobifida fusca [TaxId:2021] [187554] (2 PDB entries)
115. Species Thermotoga maritima [TaxId:2336] [186796] (4 PDB entries)
116. Species Thermotoga maritima [TaxId:243274] [226181] (7 PDB entries)
117. Species Thermotoga petrophila [TaxId:390874] [267872] (6 PDB entries)
118. Species Trichobolus zukalii [TaxId:2081540] [420090] (1 PDB entry)
119. Species Trichoderma harzianum [TaxId:5544] [319250] (6 PDB entries)
120. Species Trichoderma reesei [TaxId:51453] [225935] (5 PDB entries)
121. Species Uncultured bacterium [TaxId:77133] [188624] (13 PDB entries)
122. Species Uncultured bovine [TaxId:1093161] [420076] (1 PDB entry)
123. Species Uncultured clostridium [TaxId:59620] [376294] (1 PDB entry)
124. Species uncultured organism [TaxId:155900] [341902] (1 PDB entry)
125. Species Unidentified phage [TaxId:38018] [193872] (1 PDB entry)
126. Species Vespula vulgaris [TaxId:7454] [187426] (1 PDB entry)
127. Species Worm (Eisenia fetida) [TaxId:6396] [354050] (4 PDB entries)
128. Species Xanthomonas axonopodis [TaxId:190486] [260217] (12 PDB entries)
129. Species Zobellia galactanivorans [TaxId:63186] [359583] (2 PDB entries)
130. Species [eubacterium] eligens [TaxId:39485] [420009] (1 PDB entry)
131. Species [ruminococcus] gnavus [TaxId:33038] [361227] (3 PDB entries)
132. Species Meiothermus taiwanensis [TaxId:1339250] [423217] (1 PDB entry)

More info for Family c.1.8.0: automated matches

Timeline for Family c.1.8.0: automated matches:

Family c.1.8.0: automated matches first appeared in SCOPe 2.01
Family c.1.8.0: automated matches appears in SCOPe 2.07