SCOPe 2.04: Domain d1dfmb_: 1dfm B:

Lineage for d1dfmb_ (1dfm B:)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.52: Restriction endonuclease-like [52979] (4 superfamilies)
   core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest

4. Superfamily c.52.1: Restriction endonuclease-like [52980] (35 families)

5. Family c.52.1.5: Restriction endonuclease BglII [52993] (1 protein)

6. Protein Restriction endonuclease BglII [52994] (1 species)

7. Species Bacillus subtilis [TaxId:1423] [52995] (3 PDB entries)

8. Domain d1dfmb_: 1dfm B: [33296]
   protein/DNA complex; complexed with ca

Details for d1dfmb_

PDB Entry: 1dfm, 1.5 Å

PDB Description: crystal structure of restriction endonuclease bglii complexed with dna 16-mer

PDB Compounds: (B:) endonuclease bglii

SCOPe Domain Sequences for d1dfmb_:

Sequence, based on SEQRES records:

>d1dfmb_ c.52.1.5 (B:) Restriction endonuclease BglII {Bacillus subtilis [TaxId: 1423]}
mkiditdynhadeilnpqlwkeieetllkmplhvkasdqaskvgslifdpvgtnqyikde
lvpkhwknnipipkrfdflgtdidfgkrdtlvevqfsnypfllnntvrselfhksnmdid
eegmkvaiiitkghmfpasnsslyyeqaqnqlnslaeynvfdvpirlvgliedfetdidi
vsttyadkrysrtitkrdtvkgkvidtntpntrrrkrgtivty

Sequence, based on observed residues (ATOM records):

>d1dfmb_ c.52.1.5 (B:) Restriction endonuclease BglII {Bacillus subtilis [TaxId: 1423]}
mkiditdynhadeilnpqlwkeieetllkmplhvkasdqaskvgslifdpvgtnqyikde
lvpkhwknnipipkrfdflgtdidfgkrdtlvevqfsnypfllnntvrselfhksnmdid
eegmkvaiiitkghmfpasnsslyyeqaqnqlnslaeynvfdvpirlvgliedfetdidi
vsttyadkrysrtitkrdtvkgkvidtntrkrgtivty

Timeline for d1dfmb_:

• d1dfmb_ first appeared (with stable ids) in SCOP 1.55
  
• d1dfmb_ appears in SCOPe 2.03
  
• d1dfmb_ appears in SCOPe 2.05
  
• d1dfmb_ appears in the current release, SCOPe 2.08