Lineage for d1dfmb_ (1dfm B:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2121131Fold c.52: Restriction endonuclease-like [52979] (4 superfamilies)
    core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest
  4. 2121132Superfamily c.52.1: Restriction endonuclease-like [52980] (36 families) (S)
  5. 2121228Family c.52.1.5: Restriction endonuclease BglII [52993] (1 protein)
  6. 2121229Protein Restriction endonuclease BglII [52994] (1 species)
  7. 2121230Species Bacillus subtilis [TaxId:1423] [52995] (3 PDB entries)
  8. 2121232Domain d1dfmb_: 1dfm B: [33296]
    protein/DNA complex; complexed with ca

Details for d1dfmb_

PDB Entry: 1dfm (more details), 1.5 Å

PDB Description: Crystal structure of restriction endonuclease BGLII complexed with DNA 16-mer
PDB Compounds: (B:) endonuclease bglii

SCOPe Domain Sequences for d1dfmb_:

Sequence, based on SEQRES records: (download)

>d1dfmb_ c.52.1.5 (B:) Restriction endonuclease BglII {Bacillus subtilis [TaxId: 1423]}
mkiditdynhadeilnpqlwkeieetllkmplhvkasdqaskvgslifdpvgtnqyikde
lvpkhwknnipipkrfdflgtdidfgkrdtlvevqfsnypfllnntvrselfhksnmdid
eegmkvaiiitkghmfpasnsslyyeqaqnqlnslaeynvfdvpirlvgliedfetdidi
vsttyadkrysrtitkrdtvkgkvidtntpntrrrkrgtivty

Sequence, based on observed residues (ATOM records): (download)

>d1dfmb_ c.52.1.5 (B:) Restriction endonuclease BglII {Bacillus subtilis [TaxId: 1423]}
mkiditdynhadeilnpqlwkeieetllkmplhvkasdqaskvgslifdpvgtnqyikde
lvpkhwknnipipkrfdflgtdidfgkrdtlvevqfsnypfllnntvrselfhksnmdid
eegmkvaiiitkghmfpasnsslyyeqaqnqlnslaeynvfdvpirlvgliedfetdidi
vsttyadkrysrtitkrdtvkgkvidtntrkrgtivty

SCOPe Domain Coordinates for d1dfmb_:

Click to download the PDB-style file with coordinates for d1dfmb_.
(The format of our PDB-style files is described here.)

Timeline for d1dfmb_: