SCOPe 2.08: Domain d5b5oa_: 5b5o A:

Lineage for d5b5oa_ (5b5o A:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.92: Zincin-like [55485] (2 superfamilies)
   contains mixed beta sheet with connection over free side of the sheet

4. Superfamily d.92.1: Metalloproteases ('zincins'), catalytic domain [55486] (18 families)

5. Family d.92.1.11: Matrix metalloproteases, catalytic domain [55528] (14 proteins)

6. Protein Collagenase-3 (MMP-13) [55540] (2 species)

7. Species Human (Homo sapiens) [TaxId:9606] [55541] (47 PDB entries)

8. Domain d5b5oa_: 5b5o A: [328492]
   automated match to d1euba_
   complexed with ca, edo, na, wmm, zn

Details for d5b5oa_

PDB Entry: 5b5o, 1.2 Å

PDB Description: crystal structure of the catalytic domain of mmp-13 complexed with n- phenyl-4-((4h-1,2,4-triazol-3-ylsulfanyl)methyl)-1,3-thiazol-2-amine

PDB Compounds: (A:) collagenase 3

SCOPe Domain Sequences for d5b5oa_:

Sequence, based on SEQRES records:

>d5b5oa_ d.92.1.11 (A:) Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxId: 9606]}
ynvfprtlkwskmnltyrivnytpdmthsevekafkkafkvwsdvtplnftrlhdgiadi
misfgikehgdfypfdgpsgllahafppgpnyggdahfdddetwtssskgynlflvaahe
fghslgldhskdpgalmfpiytytgkshfmlpdddvqgiqslygpgdedp

Sequence, based on observed residues (ATOM records):

>d5b5oa_ d.92.1.11 (A:) Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxId: 9606]}
ynvfprtlkwskmnltyrivnytpdmthsevekafkkafkvwsdvtplnftrlhdgiadi
misfgikehgdfypfdgpsgllahafppgpnyggdahfdddetwtssskgynlflvaahe
fghslgldhskdpgalmfpiytytgfmlpdddvqgiqslygpgdedp

Timeline for d5b5oa_:

• d5b5oa_ first appeared in SCOPe 2.06
  
• d5b5oa_ appears in SCOPe 2.07