Lineage for Protein: Collagenase-3 (MMP-13)

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2528985Fold d.92: Zincin-like [55485] (2 superfamilies)
    contains mixed beta sheet with connection over free side of the sheet
  4. 2528986Superfamily d.92.1: Metalloproteases ("zincins"), catalytic domain [55486] (18 families) (S)
  5. 2529558Family d.92.1.11: Matrix metalloproteases, catalytic domain [55528] (14 proteins)
  6. 2529559Protein Collagenase-3 (MMP-13) [55540] (2 species)

Species:

  1. 2529560Human (Homo sapiens) [TaxId:9606] [55541] (46 PDB entries)
    1. Domain for 1eub:
    2. Domain for 1fls:
    3. Domain for 1fm1:
    4. Domains for 1xuc:
      1. 2529567Domain d1xuca_: 1xuc A: [122332]
        automated match to d1euba_
        complexed with ca, pb3, zn
      2. 2529568Domain d1xucb_: 1xuc B: [122333]
        automated match to d1euba_
        complexed with ca, pb3, zn
    5. Domains for 1xud:
      1. 2529571Domain d1xuda_: 1xud A: [122334]
        automated match to d1euba_
        complexed with ca, pb4, zn
      2. 2529572Domain d1xudb_: 1xud B: [122335]
        automated match to d1euba_
        complexed with ca, pb4, zn
    6. Domains for 1xur:
      1. 2529575Domain d1xura_: 1xur A: [122338]
        automated match to d1euba_
        complexed with ca, pb5, zn
      2. 2529576Domain d1xurb_: 1xur B: [122339]
        automated match to d1euba_
        complexed with ca, pb5, zn
    7. Domains for 1you:
      1. 2529617Domain d1youa_: 1you A: [123783]
        automated match to d1euba_
        complexed with ca, pfd, so4, zn
      2. 2529618Domain d1youb_: 1you B: [123784]
        automated match to d1euba_
        complexed with ca, pfd, so4, zn
    8. Domains for 1ztq:
      1. 2529598Domain d1ztqa_: 1ztq A: [125651]
        automated match to d1euba_
        complexed with 033, ca, zn
      2. 2529599Domain d1ztqb_: 1ztq B: [125652]
        automated match to d1euba_
        complexed with 033, ca, zn
      3. 2529600Domain d1ztqc_: 1ztq C: [125653]
        automated match to d1euba_
        complexed with 033, ca, zn
      4. 2529601Domain d1ztqd_: 1ztq D: [125654]
        automated match to d1euba_
        complexed with 033, ca, zn
    9. Domains for 2d1n:
      1. 2529619Domain d2d1na_: 2d1n A: [131132]
        automated match to d830cb_
        complexed with ca, fa4, zn
      2. 2529620Domain d2d1nb_: 2d1n B: [131133]
        automated match to d830cb_
        complexed with ca, fa4, zn
    10. Domain for 2e2d:
    11. Domains for 2ow9:
      1. 2529594Domain d2ow9a_: 2ow9 A: [139419]
        automated match to d830ca_
        complexed with ca, hae, so4, sp6, zn
      2. 2529595Domain d2ow9b_: 2ow9 B: [139420]
        automated match to d830ca_
        complexed with ca, hae, so4, sp6, zn
    12. Domains for 2ozr:
      1. 2529649Domain d2ozra_: 2ozr A: [149119]
        automated match to d1euba_
        complexed with ca, gg1, hae, zn
      2. 2529650Domain d2ozrb_: 2ozr B: [149120]
        automated match to d1euba_
        complexed with ca, gg1, hae, zn
      3. 2529651Domain d2ozrc_: 2ozr C: [149121]
        automated match to d1euba_
        complexed with ca, gg1, hae, zn
      4. 2529652Domain d2ozrd_: 2ozr D: [149122]
        automated match to d1euba_
        complexed with ca, gg1, hae, zn
      5. 2529653Domain d2ozre_: 2ozr E: [149123]
        automated match to d1euba_
        complexed with ca, gg1, hae, zn
      6. 2529654Domain d2ozrf_: 2ozr F: [149124]
        automated match to d1euba_
        complexed with ca, gg1, hae, zn
      7. 2529655Domain d2ozrg_: 2ozr G: [149125]
        automated match to d1euba_
        complexed with ca, gg1, hae, zn
      8. 2529656Domain d2ozrh_: 2ozr H: [149126]
        automated match to d1euba_
        complexed with ca, gg1, hae, zn
    13. Domains for 2pjt:
      1. 2529645Domain d2pjta_: 2pjt A: [149575]
        automated match to d1euba_
        complexed with 347, ca, zn
      2. 2529646Domain d2pjtb_: 2pjt B: [149576]
        automated match to d1euba_
        complexed with 347, ca, zn
      3. 2529647Domain d2pjtc_: 2pjt C: [149577]
        automated match to d1euba_
        complexed with 347, ca, zn
      4. 2529648Domain d2pjtd_: 2pjt D: [149578]
        automated match to d1euba_
        complexed with 347, ca, zn
    14. Domains for 2yig:
      1. 2529592Domain d2yiga_: 2yig A: [170803]
        automated match to d1euba_
        complexed with 5el, ca, na, zn
      2. 2529593Domain d2yigb_: 2yig B: [170804]
        automated match to d1euba_
        complexed with 5el, ca, na, zn
    15. Domains for 3elm:
      1. 2529609Domain d3elma_: 3elm A: [175062]
        automated match to d1euba_
        complexed with 24f, ca, zn
      2. 2529610Domain d3elmb_: 3elm B: [175063]
        automated match to d1euba_
        complexed with 24f, ca, zn
    16. Domains for 3i7g:
      1. 2529581Domain d3i7ga_: 3i7g A: [178129]
        automated match to d1euba_
        complexed with 732, ca, fmt, zn
      2. 2529582Domain d3i7gb_: 3i7g B: [178130]
        automated match to d1euba_
        complexed with 732, ca, fmt, zn
    17. Domains for 3i7i:
      1. 2529615Domain d3i7ia_: 3i7i A: [178131]
        automated match to d1euba_
        complexed with 518, ca, zn
      2. 2529616Domain d3i7ib_: 3i7i B: [178132]
        automated match to d1euba_
        complexed with 518, ca, zn
    18. Domains for 3kec:
      1. 2529637Domain d3keca1: 3kec A:105-267 [179298]
        Other proteins in same PDB: d3keca2, d3keca3, d3kecb2, d3kecb3
        automated match to d1xuca1
        complexed with 3ke, ca, hae, so4, zn
      2. 2529638Domain d3kecb1: 3kec B:105-267 [179299]
        Other proteins in same PDB: d3keca2, d3keca3, d3kecb2, d3kecb3
        automated match to d1xuca1
        complexed with 3ke, ca, hae, so4, zn
    19. Domains for 3kej:
      1. 2529602Domain d3keja_: 3kej A: [179306]
        automated match to d1xuca1
        complexed with 3ej, ca, zn
      2. 2529603Domain d3kejb_: 3kej B: [179307]
        automated match to d1xuca1
        complexed with 3ej, ca, zn
    20. Domains for 3kek:
      1. 2529621Domain d3keka_: 3kek A: [179308]
        automated match to d1xuca1
        complexed with 3ek, ca, zn
      2. 2529622Domain d3kekb_: 3kek B: [179309]
        automated match to d1xuca1
        complexed with 3ek, ca, zn
    21. Domains for 3kry:
      1. 2529611Domain d3krya_: 3kry A: [179632]
        automated match to d1youb1
        complexed with 3kr, ca, zn
      2. 2529612Domain d3kryb_: 3kry B: [179633]
        automated match to d1youb1
        complexed with 3kr, ca, zn
      3. 2529613Domain d3kryc_: 3kry C: [191748]
        automated match to d1euba_
        complexed with 3kr, ca, zn
      4. 2529614Domain d3kryd_: 3kry D: [179634]
        automated match to d1youb1
        complexed with 3kr, ca, zn
    22. Domains for 3ljz:
      1. 2529625Domain d3ljza1: 3ljz A:105-267 [199732]
        Other proteins in same PDB: d3ljza2, d3ljzb2, d3ljzc2, d3ljzd2
        automated match to d3ljzd_
        complexed with ca, epe, la3, so4, zn
      2. 2529626Domain d3ljzb1: 3ljz B:105-267 [199733]
        Other proteins in same PDB: d3ljza2, d3ljzb2, d3ljzc2, d3ljzd2
        automated match to d3ljzd_
        complexed with ca, epe, la3, so4, zn
      3. 2529627Domain d3ljzc1: 3ljz C:105-267 [199734]
        Other proteins in same PDB: d3ljza2, d3ljzb2, d3ljzc2, d3ljzd2
        automated match to d3ljzd_
        complexed with ca, epe, la3, so4, zn
      4. 2529628Domain d3ljzd1: 3ljz D:105-267 [180331]
        Other proteins in same PDB: d3ljza2, d3ljzb2, d3ljzc2, d3ljzd2
        automated match to d1youb1
        complexed with ca, epe, la3, so4, zn
    23. Domains for 3o2x:
      1. 2529577Domain d3o2xa1: 3o2x A:1105-1267 [199984]
        Other proteins in same PDB: d3o2xa2, d3o2xb2, d3o2xc2, d3o2xd2
        automated match to d3ljzd_
        complexed with 3o2, ca, epe, so4, zn
      2. 2529578Domain d3o2xb1: 3o2x B:2105-2267 [199985]
        Other proteins in same PDB: d3o2xa2, d3o2xb2, d3o2xc2, d3o2xd2
        automated match to d3ljzd_
        complexed with 3o2, ca, epe, so4, zn
      3. 2529579Domain d3o2xc1: 3o2x C:1105-1267 [199986]
        Other proteins in same PDB: d3o2xa2, d3o2xb2, d3o2xc2, d3o2xd2
        automated match to d3ljzd_
        complexed with 3o2, ca, epe, so4, zn
      4. 2529580Domain d3o2xd1: 3o2x D:2105-2267 [191905]
        Other proteins in same PDB: d3o2xa2, d3o2xb2, d3o2xc2, d3o2xd2
        automated match to d3ljzd_
        complexed with 3o2, ca, epe, so4, zn
    24. Domain for 3tvc:
    25. Domains for 3wv1:
      1. 2529629Domain d3wv1a_: 3wv1 A: [273013]
        automated match to d1euba_
        complexed with ca, fmt, na, whh, zn
      2. 2529630Domain d3wv1b_: 3wv1 B: [273012]
        automated match to d1euba_
        complexed with ca, fmt, na, whh, zn
    26. Domains for 3wv2:
      1. 2529623Domain d3wv2a_: 3wv2 A: [260135]
        automated match to d1euba_
        complexed with ca, na, wgg, zn
      2. 2529624Domain d3wv2b_: 3wv2 B: [260136]
        automated match to d1euba_
        complexed with ca, na, wgg, zn
    27. Domains for 3wv3:
      1. 2529585Domain d3wv3a_: 3wv3 A: [260128]
        automated match to d1euba_
        complexed with ca, edo, fmt, na, wll, zn
      2. 2529586Domain d3wv3b_: 3wv3 B: [260133]
        automated match to d1euba_
        complexed with ca, edo, fmt, na, wll, zn
    28. Domains for 3zxh:
      1. 2529561Domain d3zxha_: 3zxh A: [186654]
        automated match to d1euba_
        complexed with ca, e41, gol, zn
      2. 2529562Domain d3zxhb_: 3zxh B: [186655]
        automated match to d1euba_
        complexed with ca, e41, gol, zn
    29. Domains for 456c:
      1. 2529633Domain d456ca_: 456c A: [40402]
        complexed with ca, cbp, zn
      2. 2529634Domain d456cb_: 456c B: [40403]
        complexed with ca, cbp, zn
    30. Domains for 4a7b:
      1. 2529596Domain d4a7ba_: 4a7b A: [186732]
        automated match to d1euba_
        complexed with 3w4, 3w5, ca, gol, hae, na, zn
      2. 2529597Domain d4a7bb_: 4a7b B: [186733]
        automated match to d1euba_
        complexed with 3w4, 3w5, ca, gol, hae, na, zn
    31. Domains for 4fu4:
      1. 2529657Domain d4fu4a1: 4fu4 A:104-275 [266267]
        Other proteins in same PDB: d4fu4a2, d4fu4b2
        automated match to d3ba0a1
        complexed with ca, cl, edo, zn
      2. 2529658Domain d4fu4b1: 4fu4 B:104-275 [266269]
        Other proteins in same PDB: d4fu4a2, d4fu4b2
        automated match to d3ba0a1
        complexed with ca, cl, edo, zn
    32. Domains for 4fvl:
      1. 2529639Domain d4fvla1: 4fvl A:104-275 [266271]
        Other proteins in same PDB: d4fvla2, d4fvlb2
        automated match to d3ba0a1
        complexed with ca, cl, gol, peg, pgo, zn
      2. 2529640Domain d4fvlb1: 4fvl B:104-275 [266273]
        Other proteins in same PDB: d4fvla2, d4fvlb2
        automated match to d3ba0a1
        complexed with ca, cl, gol, peg, pgo, zn
    33. Domains for 4g0d:
      1. 2529641Domain d4g0da1: 4g0d A:104-275 [266287]
        Other proteins in same PDB: d4g0da2, d4g0db2, d4g0dc2, d4g0dd2
        automated match to d3ba0a1
        complexed with ca, cl, gol, peg, pgo, zn
      2. 2529642Domain d4g0db1: 4g0d B:104-275 [266289]
        Other proteins in same PDB: d4g0da2, d4g0db2, d4g0dc2, d4g0dd2
        automated match to d3ba0a1
        complexed with ca, cl, gol, peg, pgo, zn
      3. 2529643Domain d4g0dc1: 4g0d C:104-275 [266291]
        Other proteins in same PDB: d4g0da2, d4g0db2, d4g0dc2, d4g0dd2
        automated match to d3ba0a1
        complexed with ca, cl, gol, peg, pgo, zn
      4. 2529644Domain d4g0dd1: 4g0d D:104-275 [266293]
        Other proteins in same PDB: d4g0da2, d4g0db2, d4g0dc2, d4g0dd2
        automated match to d3ba0a1
        complexed with ca, cl, gol, peg, pgo, zn
    34. Domains for 4jp4:
      1. 2529565Domain d4jp4a_: 4jp4 A: [237260]
        automated match to d1euba_
        complexed with az4, ca, na, zn
      2. 2529566Domain d4jp4b_: 4jp4 B: [237262]
        automated match to d1euba_
        complexed with az4, ca, na, zn
    35. Domains for 4jpa:
      1. 2529631Domain d4jpaa_: 4jpa A: [237261]
        automated match to d1euba_
        complexed with az6, ca, na, zn
      2. 2529632Domain d4jpab_: 4jpa B: [237259]
        automated match to d1euba_
        complexed with az6, ca, na, zn
    36. Domains for 4l19:
      1. 2529573Domain d4l19a_: 4l19 A: [261659]
        automated match to d1euba_
        complexed with 1ua, ca, fmt, gol, zn
      2. 2529574Domain d4l19b_: 4l19 B: [261658]
        automated match to d1euba_
        complexed with 1ua, ca, fmt, gol, zn
    37. Domains for 5b5o:
      1. 2529563Domain d5b5oa_: 5b5o A: [328492]
        automated match to d1euba_
        complexed with ca, edo, na, wmm, zn
      2. 2529564Domain d5b5ob_: 5b5o B: [328544]
        automated match to d1euba_
        complexed with ca, edo, na, wmm, zn
    38. Domains for 5b5p:
      1. 2529587Domain d5b5pa_: 5b5p A: [328533]
        automated match to d1euba_
        complexed with ca, wnn, zn
      2. 2529588Domain d5b5pb_: 5b5p B: [328445]
        automated match to d1euba_
        complexed with ca, wnn, zn
    39. Domains for 5bot:
      1. 2529607Domain d5bota_: 5bot A: [273858]
        automated match to d1euba_
        complexed with 4um, ca, zn
      2. 2529608Domain d5botb_: 5bot B: [273861]
        automated match to d1euba_
        complexed with 4um, ca, zn
    40. Domains for 5boy:
      1. 2529635Domain d5boya_: 5boy A: [273862]
        automated match to d1euba_
        complexed with 4ue, ca, zn
      2. 2529636Domain d5boyb_: 5boy B: [273864]
        automated match to d1euba_
        complexed with 4ue, ca, zn
    41. Domains for 5bpa:
      1. 2529605Domain d5bpaa_: 5bpa A: [273863]
        automated match to d1euba_
        complexed with 4uf, ca, zn
      2. 2529606Domain d5bpab_: 5bpa B: [273859]
        automated match to d1euba_
        complexed with 4uf, ca, zn
    42. Domains for 5uwk:
      1. 2529583Domain d5uwka_: 5uwk A: [336671]
        automated match to d1euba_
        complexed with 8om, ca, zn
      2. 2529584Domain d5uwkb_: 5uwk B: [336664]
        automated match to d1euba_
        complexed with 8om, ca, zn
    43. Domains for 5uwl:
      1. 2529659Domain d5uwla_: 5uwl A: [336673]
        automated match to d1euba_
        complexed with 8oj, ca, zn
      2. 2529660Domain d5uwlb_: 5uwl B: [336668]
        automated match to d1euba_
        complexed with 8oj, ca, zn
    44. Domains for 5uwm:
      1. 2529589Domain d5uwma_: 5uwm A: [336672]
        automated match to d1euba_
        complexed with 8oa, ca, zn
      2. 2529590Domain d5uwmb_: 5uwm B: [336663]
        automated match to d1euba_
        complexed with 8oa, ca, zn
    45. Domain for 6hv2:
    46. Domains for 830c:
      1. 2529569Domain d830ca_: 830c A: [40400]
        complexed with ca, rs1, zn
      2. 2529570Domain d830cb_: 830c B: [40401]
        complexed with ca, rs1, zn
  2. 2529664Mouse (Mus musculus) [TaxId:10090] [55542] (1 PDB entry)

More info for Protein Collagenase-3 (MMP-13) from d.92.1.11: Matrix metalloproteases, catalytic domain

Timeline for Protein Collagenase-3 (MMP-13) from d.92.1.11: Matrix metalloproteases, catalytic domain: