SCOPe 2.08: Domain d1bdma1: 1bdm A:0-154

Lineage for d1bdma1 (1bdm A:0-154)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.5: LDH N-terminal domain-like [51848] (9 proteins)

6. Protein Malate dehydrogenase [51849] (13 species)

7. Species Thermus flavus [TaxId:274] [51854] (2 PDB entries)

8. Domain d1bdma1: 1bdm A:0-154 [30137]
   Other proteins in same PDB: d1bdma2, d1bdmb2
   complexed with nax; mutant

Details for d1bdma1

PDB Entry: 1bdm, 1.8 Å

PDB Description: the structure at 1.8 angstroms resolution of a single site mutant (t189i) of malate dehydrogenase from thermus flavus with increased enzymatic activity

PDB Compounds: (A:) malate dehydrogenase

SCOPe Domain Sequences for d1bdma1:

Sequence, based on SEQRES records:

>d1bdma1 c.2.1.5 (A:0-154) Malate dehydrogenase {Thermus flavus [TaxId: 274]}
mkapvrvavtgaagqigysllfriaagemlgkdqpvilqlleipqamkalegvvmeledc
afpllagleatddpdvafkdadyallvgaaprkagmerrdllqvngkifteqgralaeva
kkdvkvlvvgnpantnaliayknapglnprnftam

Sequence, based on observed residues (ATOM records):

>d1bdma1 c.2.1.5 (A:0-154) Malate dehydrogenase {Thermus flavus [TaxId: 274]}
mkapvrvavtgaagqigysllfriaagemlgkdqpvilqlleipqamkalegvvmeledc
afpllagleatddpdvafkdadyallvgaaprlqvngkifteqgralaevakkdvkvlvv
gnpantnaliayknapglnprnftam

Timeline for d1bdma1:

• d1bdma1 first appeared (with stable ids) in SCOP 1.55
  
• d1bdma1 appears in SCOPe 2.07