SCOPe 2.06: Domain d4wdzb_: 4wdz B:

Lineage for d4wdzb_ (4wdz B:)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families)

5. Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)

6. Protein automated matches [191200] (7 species)
   not a true protein

7. Species Jc polyomavirus [TaxId:10632] [270722] (7 PDB entries)

8. Domain d4wdzb_: 4wdz B: [270724]
   automated match to d4mbzj_
   complexed with edo, gol; mutant

Details for d4wdzb_

PDB Entry: 4wdz, 1.8 Å

PDB Description: jc polyomavirus vp1 five-fold pore mutant n221w

PDB Compounds: (B:) Major capsid protein VP1

SCOPe Domain Sequences for d4wdzb_:

Sequence, based on SEQRES records:

>d4wdzb_ b.121.6.1 (B:) automated matches {Jc polyomavirus [TaxId: 10632]}
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysva
riplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhf
fsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpd
ptrnentryfgtltggewvppvlhitntattvlldefgvgplckgdnlylsavdvcgmft
nrsgsqqwrglsryfkvqlrkrrvk

Sequence, based on observed residues (ATOM records):

>d4wdzb_ b.121.6.1 (B:) automated matches {Jc polyomavirus [TaxId: 10632]}
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysva
riplpnlnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggea
lelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnent
ryfgtltggewvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqq
wrglsryfkvqlrkrrvk

Timeline for d4wdzb_:

• d4wdzb_ first appeared in SCOPe 2.05
  
• d4wdzb_ appears in SCOPe 2.07
  
• d4wdzb_ appears in the current release, SCOPe 2.08