SCOP 1.61: Domain d1qdmb2: 1qdm B:2-247,B:248-338

Lineage for d1qdmb2 (1qdm B:2-247,B:248-338)

1. Root: SCOP 1.61

2. Class b: All beta proteins [48724] (111 folds)

3. Fold b.50: Acid proteases [50629] (1 superfamily)

4. Superfamily b.50.1: Acid proteases [50630] (2 families)

5. Family b.50.1.2: Pepsin-like [50646] (9 proteins)

6. Protein Plant acid proteinase, phytepsin [50655] (2 species)

7. Species Barley (Hordeum vulgare) [TaxId:4513] [50657] (1 PDB entry)

8. Domain d1qdmb2: 1qdm B:2-247,B:248-338 [26839]
   Other proteins in same PDB: d1qdma1, d1qdmb1, d1qdmc1

Details for d1qdmb2

PDB Entry: 1qdm, 2.3 Å

PDB Description: crystal structure of prophytepsin, a zymogen of a barley vacuolar aspartic proteinase.

SCOP Domain Sequences for d1qdmb2:

Sequence, based on SEQRES records:

>d1qdmb2 b.50.1.2 (B:2-247,B:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare)}
eeegdivalknymnaqyfgeigvgtppqkftvifdtgssnlwvpsakcyfsiacylhsry
kagasstykkngkpaaiqygtgsiagyfsedsvtvgdlvvkdqefieatkepgitflvak
fdgilglgfkeisvgkavpvwykmieqglvsdpvfsfwlnrhvdegeggeiifggmdpkh
yvgehtyvpvtqkgywqfdmgdvlvggkstgfcaggcaaiadsgtsllagptaiiteine
kigaagXspmgesavdcgslgsmpdieftiggkkfalkpeeyilkvgegaaaqcisgfta
mdippprgplwilgdvfmgpyhtvfdygklrigfakaa

Sequence, based on observed residues (ATOM records):

>d1qdmb2 b.50.1.2 (B:2-247,B:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare)}
eeegdivalknymnaqyfgeigvgtppqkftvifdtgssnlwvpsakcyfsiacylhsry
kagasstykkngkpaaiqygtgsiagyfsedsvtvgdlvvkdqefieatkepgitflvak
fdgilglgfkeisvgkavpvwykmieqglvsdpvfsfwlnrhvggeiifggmdpkhyvge
htyvpvtqkgywqfdmgdvlvggkstgfcaggcaaiadsgtsllagptaiiteinekiga
agXspmgesavdcgslgsmpdieftiggkkfalkpeeyilkvgegaaaqcisgftamdip
pprgplwilgdvfmgpyhtvfdygklrigfakaa

Timeline for d1qdmb2:

• d1qdmb2 first appeared (with stable ids) in SCOP 1.55
  
• d1qdmb2 appears in SCOP 1.59
  
• d1qdmb2 appears in SCOP 1.63
  
• d1qdmb2 appears in the current release, SCOPe 2.08