SCOPe 2.06: Domain d4q5sf1: 4q5s F:78-257

Lineage for d4q5sf1 (4q5s F:78-257)

1. Root: SCOPe 2.06

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.177: Sigma2 domain of RNA polymerase sigma factors [88945] (1 superfamily)
   multihelical; consists of a conserved 4-helical core and a variable insert subdomain

4. Superfamily a.177.1: Sigma2 domain of RNA polymerase sigma factors [88946] (2 families)

5. Family a.177.1.1: Sigma2 domain of RNA polymerase sigma factors [88947] (6 proteins)

6. Protein automated matches [254474] (3 species)
   not a true protein

7. Species Thermus thermophilus [TaxId:300852] [258305] (2 PDB entries)

8. Domain d4q5sf1: 4q5s F:78-257 [259967]
   Other proteins in same PDB: d4q5sc_, d4q5sd_, d4q5se_, d4q5sf2, d4q5sf3
   automated match to d1smyf3
   protein/DNA complex; protein/RNA complex; complexed with atp, mg, zn

Details for d4q5sf1

PDB Entry: 4q5s, 3 Å

PDB Description: Thermus thermophilus RNA polymerase initially transcribing complex containing 6-mer RNA

PDB Compounds: (F:) RNA polymerase sigma factor SigA

SCOPe Domain Sequences for d4q5sf1:

Sequence; same for both SEQRES and ATOM records:

>d4q5sf1 a.177.1.1 (F:78-257) automated matches {Thermus thermophilus [TaxId: 300852]}
sdpvrqylheigqvplltleeevelarkveegmeaikklseitgldpdlirevvrakilg
sarvrhipglketldpktveeidqklkslpkehkrylhiaregeaarqhlieanlrlvvs
iakkytgrglsfldliqegnqgliravekfeykrrfkfstyatwwirqainraiadqart

Timeline for d4q5sf1:

• d4q5sf1 first appeared in SCOPe 2.04
  
• d4q5sf1 appears in SCOPe 2.05
  
• d4q5sf1 appears in SCOPe 2.07
  
• d4q5sf1 appears in the current release, SCOPe 2.08