SCOPe 2.04: Domain d4nyfb_: 4nyf B:

Lineage for d4nyfb_ (4nyf B:)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (15 families)
   consists of one domain of this fold

5. Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (2 proteins)

6. Protein automated matches [190209] (7 species)
   not a true protein

7. Species Human immunodeficiency virus type 1 [TaxId:82834] [257201] (1 PDB entry)

8. Domain d4nyfb_: 4nyf B: [257202]
   automated match to d3vq9c_
   complexed with 4bi, cd

Details for d4nyfb_

PDB Entry: 4nyf, 1.9 Å

PDB Description: HIV integrase in complex with inhibitor

PDB Compounds: (B:) integrase

SCOPe Domain Sequences for d4nyfb_:

Sequence, based on SEQRES records:

>d4nyfb_ c.55.3.2 (B:) automated matches {Human immunodeficiency virus type 1 [TaxId: 82834]}
sspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktiht
dngsnftsatvkaacdwagikqedgipynpqsqgvvesmnkelkkiigqvrdqaehlkta
vqmavfihnkkrkggiggysagerivdiiatd

Sequence, based on observed residues (ATOM records):

>d4nyfb_ c.55.3.2 (B:) automated matches {Human immunodeficiency virus type 1 [TaxId: 82834]}
sspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktiht
dngsnftsatvkaacdwagikqedgipynpesmnkelkkiigqvrdqaehlktavqmavf
ihnkkrysagerivdiiatd

Timeline for d4nyfb_:

• d4nyfb_ is new in SCOPe 2.04-stable
  
• d4nyfb_ appears in SCOPe 2.05
  
• d4nyfb_ appears in the current release, SCOPe 2.08