SCOPe 2.08: Domain d3e3md1: 3e3m D:69-345

Lineage for d3e3md1 (3e3m D:69-345)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.93: Periplasmic binding protein-like I [53821] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   parallel beta-sheet of 6 strands, order 213456

4. Superfamily c.93.1: Periplasmic binding protein-like I [53822] (2 families)
   Similar in architecture to the superfamily II but partly differs in topology

5. Family c.93.1.0: automated matches [191439] (1 protein)
   not a true family

6. Protein automated matches [190646] (77 species)
   not a true protein

7. Species Silicibacter pomeroyi [TaxId:89184] [255808] (2 PDB entries)

8. Domain d3e3md1: 3e3m D:69-345 [245796]
   Other proteins in same PDB: d3e3ma2, d3e3mb2, d3e3mc2, d3e3md2
   automated match to d2nzug_

Details for d3e3md1

PDB Entry: 3e3m, 1.6 Å

PDB Description: crystal structure of a laci family transcriptional regulator from silicibacter pomeroyi

PDB Compounds: (D:) Transcriptional regulator, LacI family

SCOPe Domain Sequences for d3e3md1:

Sequence, based on SEQRES records:

>d3e3md1 c.93.1.0 (D:69-345) automated matches {Silicibacter pomeroyi [TaxId: 89184]}
gfvglllpslnnlhfaqtaqsltdvleqgglqlllgytayspereeqlvetmlrrrpeam
vlsydghteqtirllqrasipiveiwekpahpightvgfsneraaydmtnallargfrki
vflgekdddwtrgaarragfkramreaglnpdqeirlgapplsiedgvaaaelilqeypd
tdcifcvsdmpafgllsrlksigvavpeqvsvvgfgnfevsrfaspeistvrvdpiaigr
etgslilrlldpkqrspqtaqhitlppvlefrpslkn

Sequence, based on observed residues (ATOM records):

>d3e3md1 c.93.1.0 (D:69-345) automated matches {Silicibacter pomeroyi [TaxId: 89184]}
gfvglllpslnnlhfaqtaqsltdvleqgglqlllgytayspereeqlvetmlrrrpeam
vlsydghteqtirllqrasipiveiwekpahpightvgfsneraaydmtnallargfrki
vflgekdddwtrgaarragfkramreaglnpdqeirlgapplsiedgvaaaelilqeypd
tdcifcvsdmpafgllsrlksigvavpeqvsvvgfgnfevsrfaspeistvrvdpiaigr
etgslilrlldaqhitlppvlefrpslkn

Timeline for d3e3md1:

• d3e3md1 first appeared in SCOPe 2.04, called d3e3md_
  
• d3e3md1 appears in SCOPe 2.07