SCOPe 2.08: Domain d2q1ub_: 2q1u B:

Lineage for d2q1ub_ (2q1u B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.0: automated matches [191313] (1 protein)
   not a true family

6. Protein automated matches [190069] (319 species)
   not a true protein

7. Species Bordetella bronchiseptica [TaxId:518] [225344] (8 PDB entries)

8. Domain d2q1ub_: 2q1u B: [243518]
   automated match to d1r6da_
   complexed with gol, nad, udp

Details for d2q1ub_

PDB Entry: 2q1u, 1.7 Å

PDB Description: Crystal structure of the Bordetella bronchiseptica enzyme WbmF in complex with NAD+ and UDP

PDB Compounds: (B:) Putative nucleotide sugar epimerase/ dehydratase

SCOPe Domain Sequences for d2q1ub_:

Sequence, based on SEQRES records:

>d2q1ub_ c.2.1.0 (B:) automated matches {Bordetella bronchiseptica [TaxId: 518]}
asklantnvmvvggagfvgsnlvkrllelgvnqvhvvdnllsaekinvpdhpavrfsets
itddallaslqdeydyvfhlatyhgnqssihdpladhenntlttlklyerlkhfkrlkkv
vysaagcsiaektfddakateetdivslhnndspysmskifgefysvyyhkqhqlptvra
rfqnvygpgeilgagrwrgtpatvwrnvtptfiykalkgmplplenggvatrdfifvedv
angliacaadgtpggvyniasgketsiadlatkineitgnnteldrlpkrpwdnsgkrfg
spekarrelgfsadvsiddglrktiewtkanlavieqimrkhdsalaty

Sequence, based on observed residues (ATOM records):

>d2q1ub_ c.2.1.0 (B:) automated matches {Bordetella bronchiseptica [TaxId: 518]}
asklantnvmvvggagfvgsnlvkrllelgvnqvhvvdnllsaekinvpdhpavrfsets
itddallaslqdeydyvfhlatyhgnqssihdpladhenntlttlklyerlkhfkrlkkv
vysaageetdivslhnndspysmskifgefysvyyhkqhqlptvrarfqnvygpgeilga
grwrgtpatvwrnvtptfiykalkgmplplenggvatrdfifvedvangliacaadgtpg
gvyniasgketsiadlatkineitgnnteldrlpkrpwdnsgkrfgspekarrelgfsad
vsiddglrktiewtkanlavieqimrkhdsalaty

Timeline for d2q1ub_:

• d2q1ub_ first appeared in SCOPe 2.04
  
• d2q1ub_ appears in SCOPe 2.07