SCOPe 2.04: Domain d3knuc_: 3knu C:

Lineage for d3knuc_ (3knu C:)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.116: alpha/beta knot [75216] (1 superfamily)
   core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot

4. Superfamily c.116.1: alpha/beta knot [75217] (9 families)
   known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
   all known members have dimeric structures

5. Family c.116.1.0: automated matches [191557] (1 protein)
   not a true family

6. Protein automated matches [190961] (13 species)
   not a true protein

7. Species Anaplasma phagocytophilum [TaxId:212042] [232723] (2 PDB entries)

8. Domain d3knuc_: 3knu C: [232726]
   automated match to d3quva_

Details for d3knuc_

PDB Entry: 3knu, 2.25 Å

PDB Description: crystal structure of trna (guanine-n1)-methyltransferase from anaplasma phagocytophilum

PDB Compounds: (C:) tRNA (guanine-N(1)-)-methyltransferase

SCOPe Domain Sequences for d3knuc_:

Sequence, based on SEQRES records:

>d3knuc_ c.116.1.0 (C:) automated matches {Anaplasma phagocytophilum [TaxId: 212042]}
smifnvltifpqmfpgplgvsnlgsalkkglwtlnvfdirafannkhntvddtpygggpg
mllradvlgrcidevlslhpntklmftsprgvsftqdiarqtmnfdnitllcgrfegide
rvvdfyklqevsigdyvlsggelaamviidtcvrmvpgvignaeslkqesmegsleypqy
trpaswkgmevpevlltgnhgeiekwrrnas

Sequence, based on observed residues (ATOM records):

>d3knuc_ c.116.1.0 (C:) automated matches {Anaplasma phagocytophilum [TaxId: 212042]}
smifnvltifpqmfpgplgvsnlgsalkkglwtlnvfdirafannkhntvddtpygggpg
mllradvlgrcidevlslhpntklmftsprgvsftqdiarqtmnfdnitllcgrfegide
rvvdfyklqevsigdyvlsggelaamviidtcvrmvpgvignleypqytrpaswkgmevp
evlltgnhgeiekwrrnas

Timeline for d3knuc_:

• d3knuc_ first appeared in SCOPe 2.03
  
• d3knuc_ appears in SCOPe 2.05
  
• d3knuc_ appears in the current release, SCOPe 2.08, called d3knuc1