SCOPe 2.06: Domain d3oaec1: 3oae C:21-474

Lineage for d3oaec1 (3oae C:21-474)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families)

5. Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)

6. Protein automated matches [191200] (7 species)
   not a true protein

7. Species Human papillomavirus [TaxId:10566] [189523] (2 PDB entries)

8. Domain d3oaec1: 3oae C:21-474 [200034]
   Other proteins in same PDB: d3oaea2, d3oaeb2, d3oaec2, d3oaed2, d3oaee2
   automated match to d3oaed_
   complexed with ids, jhm

Details for d3oaec1

PDB Entry: 3oae, 2.8 Å

PDB Description: crystal structure of hpv16 l1 pentamer bound to heparin oligosaccharides

PDB Compounds: (C:) late major capsid protein l1

SCOPe Domain Sequences for d3oaec1:

Sequence, based on SEQRES records:

>d3oaec1 b.121.6.1 (C:21-474) automated matches {Human papillomavirus [TaxId: 10566]}
vvstdeyvartniyyhagtsrllavghpyfpikkpnnnkilvpkvsglqyrvfrihlpdp
nkfgfpdtsfynpdtqrlvwacvgvevgrgqplgvgisghpllnklddtenasayaanag
vdnrecismdykqtqlcligckppigehwgkgspctqvavqpgdcpplelintviqdgdm
vdtgfgamdfttlqanksevpldictsickypdyikmvsepygdslffylrreqmfvrhl
fnragtvgenvpddlyikgsgstanlassnyfptpsgsmvtsdaqifnkpywlqraqghn
ngicwgnqlfvtvvdttrstnmslcaaistsettykntnfkeylrhgeeydlqfifqlck
itltadvmtyihsmnstiledwnggsggedplkkytfwevnlkekfsadldqfplgrkfl
lqlgl

Sequence, based on observed residues (ATOM records):

>d3oaec1 b.121.6.1 (C:21-474) automated matches {Human papillomavirus [TaxId: 10566]}
vvstdeyvartniyyhagtsrllavghpyfpikkpnnnkilvpkvsglqyrvfrihlpdp
nkfgfpdtsfynpdtqrlvwacvgvevgrgqplgvgisghpllnklddtenasayaanag
vdnrecismdykqtqlcligckppigehwgkgspctqvavqpgdcpplelintviqdgdm
vdtgfgamdfttlqanksevpldictsickypdyikmvsepygdslffylrreqmfvrhl
fnragtvgenvpddlyikgsgstanlassnyfptpsgsmvtsdaqifnkpywlqraqghn
ngicwgnqlfvtvvdttrstnmslcaaistsettykntnfkeylrhgeeydlqfifqlck
itltadvmtyihsmnstiledwnedplkkytfwevnlkekfsadldqfplgrkfllqlgl

Timeline for d3oaec1:

• d3oaec1 first appeared in SCOPe 2.03, called d3oaec_
  
• d3oaec1 was called d3oaec_ in SCOPe 2.05
  
• d3oaec1 does not appear in SCOPe 2.07