SCOPe 2.08: Domain d2yc3a1: 2yc3 A:76-300

Lineage for d2yc3a1 (2yc3 A:76-300)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
   3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest

4. Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families)

5. Family c.68.1.13: Cytidylytransferase [68901] (7 proteins)

6. Protein 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) [64140] (4 species)

7. Species Thale cress (Arabidopsis thaliana), chloroplast [TaxId:3702] [142690] (12 PDB entries)
   Uniprot P69834 75-300

8. Domain d2yc3a1: 2yc3 A:76-300 [196204]
   Other proteins in same PDB: d2yc3a2
   automated match to d1w77a1
   complexed with cd, cu, mw5, na

Details for d2yc3a1

PDB Entry: 2yc3, 1.4 Å

PDB Description: inhibitors of the herbicidal target ispd

PDB Compounds: (A:) 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase, chloroplastic

SCOPe Domain Sequences for d2yc3a1:

Sequence, based on SEQRES records:

>d2yc3a1 c.68.1.13 (A:76-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
eksvsvillaggqgkrmkmsmpkqyipllgqpialysfftfsrmpevkeivvvcdpffrd
ifeeyeesidvdlsfaipgkerqdsvysglqeidvnselvcihdsarplvntedvekvlk
dgsavgaavlgvpakatikevnsdslvvktldrktlwemqtpqvikpellkkgfelvkse
glevtddvsiveylkhpvyvsqgsytnikvttpddlllaerilse

Sequence, based on observed residues (ATOM records):

>d2yc3a1 c.68.1.13 (A:76-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
eksvsvillaggqgpkqyipllgqpialysfftfsrmpevkeivvvcdpffrdifeeyee
sidvdlsfaipgkerqdsvysglqeidvnselvcihdsarplvntedvekvlkdgsavga
avlgvpakatikevnsdslvvktldrktlwemqtpqvikpellkkgfelvkseglevtdd
vsiveylkhpvyvsqgsytnikvttpddlllaerilse

Timeline for d2yc3a1:

• d2yc3a1 first appeared in SCOPe 2.02, called d2yc3a_
  
• d2yc3a1 appears in SCOPe 2.07