SCOPe 2.06: Domain d4b8ab1: 4b8a B:7-283

Lineage for d4b8ab1 (4b8a B:7-283)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (15 families)
   consists of one domain of this fold

5. Family c.55.3.9: CAF1-like ribonuclease [102492] (3 proteins)

6. Protein automated matches [194311] (1 species)
   not a true protein

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [194312] (1 PDB entry)

8. Domain d4b8ab1: 4b8a B:7-283 [194313]
   Other proteins in same PDB: d4b8ab2
   automated match to d1uoca_

Details for d4b8ab1

PDB Entry: 4b8a, 2.4 Å

PDB Description: structure of yeast not1 mif4g domain co-crystallized with caf1

PDB Compounds: (B:) poly(a) ribonuclease pop2

SCOPe Domain Sequences for d4b8ab1:

Sequence, based on SEQRES records:

>d4b8ab1 c.55.3.9 (B:7-283) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]}
flpppnylfvrdvwksnlysefavirqlvsqynhvsistefvgtlarpigtfrskvdyhy
qtmranvdflnpiqlglslsdangnkpdngpstwqfnfefdpkkeimsteslellrksgi
nfekhenlgidvfefsqllmdsglmmddsvtwityhaaydlgflinilmndsmpnnkedf
ewwvhqympnfydlnlvykiiqefknpqlqqssqqqqqqqyslttladelglprfsiftt
tggqsllmllsfcqlsklsmhkfpngtdfakyqgviy

Sequence, based on observed residues (ATOM records):

>d4b8ab1 c.55.3.9 (B:7-283) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]}
flpppnylfvrdvwksnlysefavirqlvsqynhvsistefvgtlarkvdyhyqtmranv
dflnpiqlglslsdangnkpdngpstwqfnfefdpkkeimsteslginfekhenlgidvf
efsqllmdsglmmddsvtwityhaaydlgflinilmndsmpnnkedfewwvhqympnfyd
lnlvykiiqefknqyslttladelglprfsiftttggqsllmllsfcqlsklsmhkfpng
tdfakyqgviy

Timeline for d4b8ab1:

• d4b8ab1 first appeared in SCOPe 2.02, called d4b8ab_
  
• d4b8ab1 was called d4b8ab_ in SCOPe 2.05
  
• d4b8ab1 appears in SCOPe 2.07
  
• d4b8ab1 appears in the current release, SCOPe 2.08