SCOPe 2.05: Domain d4d8dd_: 4d8d D:

Lineage for d4d8dd_ (4d8d D:)

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.102: Regulatory factor Nef [55670] (1 superfamily)
   alpha(2)-beta(4)-alpha; 3 layers: alpha/beta/alpha

4. Superfamily d.102.1: Regulatory factor Nef [55671] (2 families)

5. Family d.102.1.1: Regulatory factor Nef [55672] (2 proteins)
   automatically mapped to Pfam PF00469

6. Protein automated matches [191288] (2 species)
   not a true protein

7. Species Human immunodeficiency virus type 1 [TaxId:11686] [194153] (1 PDB entry)

8. Domain d4d8dd_: 4d8d D: [194155]
   Other proteins in same PDB: d4d8da_, d4d8dc_
   automated match to d1avzb_
   complexed with gol

Details for d4d8dd_

PDB Entry: 4d8d, 2.52 Å

PDB Description: crystal structure of hiv-1 nef fyn-sh3 r96w variant

PDB Compounds: (D:) Protein Nef

SCOPe Domain Sequences for d4d8dd_:

Sequence, based on SEQRES records:

>d4d8dd_ d.102.1.1 (D:) automated matches {Human immunodeficiency virus type 1 [TaxId: 11686]}
vtpqvplrpmtykaavdlshflkekggleglihsqrrqdildlwiyhtqgyfpdwqnytp
gpgvrypltfgwcyklvpvepdkveeankgentsllhpvslhgmddperevlewrfdsrl
afhhvarelhpeyfk

Sequence, based on observed residues (ATOM records):

>d4d8dd_ d.102.1.1 (D:) automated matches {Human immunodeficiency virus type 1 [TaxId: 11686]}
vtpqvplrpmtykaavdlshflkekggleglihsqrrqdildlwiyhtqgyfpdwqnytp
gpgvrypltfgwcyklvpvevlewrfdsrlafhhvarelhpeyfk

Timeline for d4d8dd_:

• d4d8dd_ first appeared in SCOPe 2.02
  
• d4d8dd_ appears in SCOPe 2.04
  
• d4d8dd_ appears in SCOPe 2.06
  
• d4d8dd_ appears in the current release, SCOPe 2.08