SCOPe 2.05: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.05
Class b: All beta proteins [48724] (176 folds)
Fold b.40: OB-fold [50198] (16 superfamilies)
barrel, closed or partly opened n=5, S=10 or S=8; greek-key
Superfamily b.40.4: Nucleic acid-binding proteins [50249] (17 families)
Family b.40.4.3: Single strand DNA-binding domain, SSB [50263] (13 proteins)
barrel, closed; n=5, S=10
Protein automated matches [190206] (8 species)
not a true protein

Species:

Escherichia coli K-12 [TaxId:83333] [187026] (3 PDB entries)
1. Domains for 1woc:
  1. Domain d1woca_: 1woc A: [161967]
    automated match to d1v1qa_
  2. Domain d1wocb_: 1woc B: [161968]
    automated match to d1v1qa_
  3. Domain d1wocc_: 1woc C: [161969]
    automated match to d1v1qa_
  4. Domain d1wocd_: 1woc D: [161970]
    automated match to d1v1qa_
2. Domains for 2ccz:
  1. Domain d2ccza_: 2ccz A: [130260]
    automated match to d1v1qa_
    protein/DNA complex
  2. Domain d2cczb_: 2ccz B: [130261]
    automated match to d1v1qa_
    protein/DNA complex
3. Domains for 2pnh:
  1. Domain d2pnha_: 2pnh A: [167222]
    automated match to d1v1qa_
  2. Domain d2pnhb_: 2pnh B: [167223]
    automated match to d1v1qa_
Human (Homo sapiens) [TaxId:9606] [186959] (24 PDB entries)
1. Domain for 2b29:
  - Domain d2b29a_: 2b29 A: [127705]
    automated match to d1ewia_
2. Domain for 2b3g:
  - Domain d2b3ga_: 2b3g A: [127786]
    automated match to d1ewia_
3. Domains for 2dud:
  1. Domain d2duda_: 2dud A: [131749]
    automated match to d1s3ob_
  2. Domain d2dudb_: 2dud B: [131750]
    automated match to d1s3ob_
4. Domains for 2pi2:
  1. Domain d2pi2e_: 2pi2 E: [149497]
    Other proteins in same PDB: d2pi2a_, d2pi2b_, d2pi2c_, d2pi2d_
    automated match to d3kdfc_
    complexed with dio
  2. Domain d2pi2f_: 2pi2 F: [149498]
    Other proteins in same PDB: d2pi2a_, d2pi2b_, d2pi2c_, d2pi2d_
    automated match to d3kdfc_
    complexed with dio
  3. Domain d2pi2g_: 2pi2 G: [149499]
    Other proteins in same PDB: d2pi2a_, d2pi2b_, d2pi2c_, d2pi2d_
    automated match to d3kdfc_
    complexed with dio
  4. Domain d2pi2h_: 2pi2 H: [149500]
    Other proteins in same PDB: d2pi2a_, d2pi2b_, d2pi2c_, d2pi2d_
    automated match to d3kdfc_
    complexed with dio
5. Domains for 2pqa:
  1. Domain d2pqab_: 2pqa B: [149789]
    Other proteins in same PDB: d2pqaa_, d2pqac_
    automated match to d3kdfc_
  2. Domain d2pqad_: 2pqa D: [149791]
    Other proteins in same PDB: d2pqaa_, d2pqac_
    automated match to d3kdfc_
6. Domains for 2z6k:
  1. Domain d2z6kc_: 2z6k C: [154178]
    Other proteins in same PDB: d2z6ka_, d2z6kb_
    automated match to d3kdfc_
  2. Domain d2z6kd_: 2z6k D: [154179]
    Other proteins in same PDB: d2z6ka_, d2z6kb_
    automated match to d3kdfc_
7. Domains for 3kdf:
  1. Domain d3kdfa_: 3kdf A: [179290]
    automated match to d1l1oa_
    protein/DNA complex; complexed with edo
  2. Domain d3kdfb_: 3kdf B: [179291]
    automated match to d1l1ob_
    protein/DNA complex; complexed with edo
  3. Domain d3kdfc_: 3kdf C: [179292]
    automated match to d1l1oa_
    protein/DNA complex; complexed with edo
  4. Domain d3kdfd_: 3kdf D: [179293]
    automated match to d1l1ob_
    protein/DNA complex; complexed with edo
8. Domain for 4ijh:
  - Domain d4ijha_: 4ijh A: [223221]
    automated match to d2b3ga_
    protein/DNA complex; complexed with 1ej
9. Domain for 4ijl:
  - Domain d4ijla_: 4ijl A: [223226]
    automated match to d2b3ga_
    protein/DNA complex; complexed with 1ek
10. Domain for 4ipc:
  - Domain d4ipca_: 4ipc A: [227867]
    automated match to d4ijha_
    mutant
11. Domain for 4ipd:
  - Domain d4ipda_: 4ipd A: [227869]
    automated match to d4ijha_
    mutant
12. Domain for 4ipg:
  - Domain d4ipga_: 4ipg A: [227866]
    automated match to d4ijha_
    mutant
13. Domain for 4iph:
  - Domain d4ipha_: 4iph A: [227868]
    automated match to d4ijha_
    complexed with 1fj
14. Domain for 4luo:
  - Domain d4luoa_: 4luo A: [229645]
    automated match to d4ijha_
    complexed with 1dz
15. Domain for 4luv:
  - Domain d4luva_: 4luv A: [229646]
    automated match to d4ijha_
    protein/DNA complex; complexed with 1dz, 1xs
16. Domain for 4luz:
  - Domain d4luza_: 4luz A: [229642]
    automated match to d4ijha_
    protein/DNA complex; complexed with 1xt
17. Domain for 4lw1:
  - Domain d4lw1a_: 4lw1 A: [229643]
    automated match to d4ijha_
    protein/DNA complex; complexed with 1xs
18. Domain for 4lwc:
  - Domain d4lwca_: 4lwc A: [229644]
    automated match to d4ijha_
    protein/DNA complex; complexed with 1xu
19. Domain for 4o0a:
  - Domain d4o0aa_: 4o0a A: [235902]
    automated match to d4ijha_
    protein/DNA complex; complexed with 2p9
20. Domain for 4r4c:
  - Domain d4r4ca_: 4r4c A: [267374]
    automated match to d4ipca_
    complexed with 3hs
21. Domain for 4r4i:
  - Domain d4r4ia_: 4r4i A: [267375]
    automated match to d4ipca_
    complexed with 3hv
22. Domain for 4r4o:
  - Domain d4r4oa_: 4r4o A: [261137]
    automated match to d4ipca_
    complexed with 3hw
23. Domain for 4r4q:
  - Domain d4r4qa_: 4r4q A: [267376]
    automated match to d4ipca_
    complexed with 3hz
24. Domain for 4r4t:
  - Domain d4r4ta_: 4r4t A: [267377]
    automated match to d4ipca_
    complexed with 3j0
Klebsiella pneumoniae [TaxId:573] [226356] (1 PDB entry)
- Domain for 4apv:
  - Domain d4apva_: 4apv A: [219097]
    automated match to d1v1qa_
Mycobacterium leprae [TaxId:272631] [255745] (2 PDB entries)
1. Domains for 3afp:
  1. Domain d3afpa_: 3afp A: [245134]
    automated match to d1ue1b_
    complexed with cd, gol
  2. Domain d3afpb_: 3afp B: [245135]
    automated match to d1ue1b_
    complexed with cd, gol
2. Domains for 3afq:
  1. Domain d3afqa_: 3afq A: [245136]
    automated match to d1ue1b_
  2. Domain d3afqb_: 3afq B: [245137]
    automated match to d1ue1b_
  3. Domain d3afqc_: 3afq C: [245138]
    automated match to d1ue1b_
  4. Domain d3afqd_: 3afq D: [245139]
    automated match to d1ue1b_
Mycobacterium smegmatis [TaxId:1772] [254961] (3 PDB entries)
1. Domains for 1x3e:
  1. Domain d1x3ea_: 1x3e A: [240945]
    automated match to d1ue1b_
    complexed with cd
  2. Domain d1x3eb_: 1x3e B: [240946]
    automated match to d1ue1b_
    complexed with cd
2. Domains for 1x3f:
  1. Domain d1x3fa_: 1x3f A: [240947]
    automated match to d1ue1b_
    complexed with cd
  2. Domain d1x3fb_: 1x3f B: [240948]
    automated match to d1ue1b_
    complexed with cd
3. Domains for 1x3g:
  1. Domain d1x3ga_: 1x3g A: [240949]
    automated match to d1ue1b_
    complexed with cd
  2. Domain d1x3gb_: 1x3g B: [240950]
    automated match to d1ue1b_
    complexed with cd
Mycobacterium smegmatis [TaxId:246196] [189407] (1 PDB entry)
- Domains for 3a5u:
  1. Domain d3a5ua_: 3a5u A: [171758]
    automated match to d1ue1b_
    protein/DNA complex
  2. Domain d3a5ub_: 3a5u B: [171759]
    automated match to d1ue1b_
    protein/DNA complex
Streptomyces coelicolor [TaxId:1902] [255819] (1 PDB entry)
- Domains for 3eiv:
  1. Domain d3eiva_: 3eiv A: [245870]
    automated match to d1ue1b_
  2. Domain d3eivb_: 3eiv B: [245871]
    automated match to d1ue1b_
  3. Domain d3eivc_: 3eiv C: [245872]
    automated match to d1ue1b_
  4. Domain d3eivd_: 3eiv D: [245873]
    automated match to d1ue1b_
Sulfolobus solfataricus [TaxId:273057] [261789] (1 PDB entry)
- Domain for 2mna:
  - Domain d2mnaa_: 2mna A: [261790]
    automated match to d1o7ib_
    protein/DNA complex

More info for Protein automated matches from b.40.4.3: Single strand DNA-binding domain, SSB

Timeline for Protein automated matches from b.40.4.3: Single strand DNA-binding domain, SSB:

Protein automated matches from b.40.4.3: Single strand DNA-binding domain, SSB first appeared in SCOPe 2.01
Protein automated matches from b.40.4.3: Single strand DNA-binding domain, SSB appears in SCOPe 2.04
Protein automated matches from b.40.4.3: Single strand DNA-binding domain, SSB appears in SCOPe 2.06
Protein automated matches from b.40.4.3: Single strand DNA-binding domain, SSB appears in the current release, SCOPe 2.08