PDB entry 3afq

View 3afq on RCSB PDB site
Description: Crystal structure of the single-stranded DNA binding protein from Mycobacterium leprae (Form II)
Class: DNA binding protein
Keywords: OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage, DNA repair, DNA replication, DNA-binding, DNA BINDING PROTEIN
Deposited on 2010-03-10, released 2010-10-06
The last revision prior to the SCOPe 2.05 freeze date was dated 2012-04-04, with a file datestamp of 2012-03-30.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.212
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Single-stranded DNA-binding protein
    Species: Mycobacterium leprae [TaxId:272631]
    Gene: ssb
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3afqa_
  • Chain 'B':
    Compound: Single-stranded DNA-binding protein
    Species: Mycobacterium leprae [TaxId:272631]
    Gene: ssb
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3afqb_
  • Chain 'C':
    Compound: Single-stranded DNA-binding protein
    Species: Mycobacterium leprae [TaxId:272631]
    Gene: ssb
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3afqc_
  • Chain 'D':
    Compound: Single-stranded DNA-binding protein
    Species: Mycobacterium leprae [TaxId:272631]
    Gene: ssb
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3afqd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3afqA (A:)
magdttitivgnltadpelrftssgaavvnftvastpriydrqsgewkdgealflrcniw
reaaenvaesltrgarvivtgrlkqrsfetregekrtvvevevdeigpslryatakvnka
srsggggggfgsgsrqapaqmsggvgddpwgsaptsgsfgvgdeeppf

    Sequence, based on observed residues (ATOM records): (download) 
    >3afqA (A:)
agdttitivgnltadpelrftssgaavvnftvastpkdgealflrcniwreaaenvaesl
trgarvivtgrlkqrsfetrrtvvevevdeigpslryatakvnka

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3afqB (B:)
magdttitivgnltadpelrftssgaavvnftvastpriydrqsgewkdgealflrcniw
reaaenvaesltrgarvivtgrlkqrsfetregekrtvvevevdeigpslryatakvnka
srsggggggfgsgsrqapaqmsggvgddpwgsaptsgsfgvgdeeppf

    Sequence, based on observed residues (ATOM records): (download) 
    >3afqB (B:)
agdttitivgnltadpelrftssgaavvnftvastpriydrgewkdgealflrcniwrea
aenvaesltrgarvivtgrlkqrsfgekrtvvevevdeigpslryatakvnka

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3afqC (C:)
magdttitivgnltadpelrftssgaavvnftvastpriydrqsgewkdgealflrcniw
reaaenvaesltrgarvivtgrlkqrsfetregekrtvvevevdeigpslryatakvnka
srsggggggfgsgsrqapaqmsggvgddpwgsaptsgsfgvgdeeppf

    Sequence, based on observed residues (ATOM records): (download) 
    >3afqC (C:)
agdttitivgnltadpelrftssgaavvnftvastprewkdgealflrcniwreaaenva
esltrgarvivtgrlkqrskrtvvevevdeigpslryatakvnka

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3afqD (D:)
magdttitivgnltadpelrftssgaavvnftvastpriydrqsgewkdgealflrcniw
reaaenvaesltrgarvivtgrlkqrsfetregekrtvvevevdeigpslryatakvnka
srsggggggfgsgsrqapaqmsggvgddpwgsaptsgsfgvgdeeppf

    Sequence, based on observed residues (ATOM records): (download) 
    >3afqD (D:)
agdttitivgnltadpelrftssgaavvnftvastpriydwkdgealflrcniwreaaen
vaesltrgarvivtgrlkqrsfetvvevevdeigpslryatakvnka