Lineage for d1d3ub1 (1d3u B:1100-1205)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2000824Fold a.74: Cyclin-like [47953] (1 superfamily)
    core: 5 helices; one helix is surrounded by the others
  4. 2000825Superfamily a.74.1: Cyclin-like [47954] (4 families) (S)
    duplication: consists of two domains of this fold
  5. 2001320Family a.74.1.2: Transcription factor IIB (TFIIB), core domain [47965] (1 protein)
  6. 2001321Protein Transcription factor IIB (TFIIB), core domain [47966] (2 species)
  7. 2001339Species Pyrococcus woesei [TaxId:2262] [47968] (2 PDB entries)
  8. 2001342Domain d1d3ub1: 1d3u B:1100-1205 [18386]
    Other proteins in same PDB: d1d3ua1, d1d3ua2
    protein/DNA complex

Details for d1d3ub1

PDB Entry: 1d3u (more details), 2.4 Å

PDB Description: tata-binding protein/transcription factor (ii)b/bre+tata-box complex from pyrococcus woesei
PDB Compounds: (B:) transcription initiation factor iib

SCOPe Domain Sequences for d1d3ub1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1d3ub1 a.74.1.2 (B:1100-1205) Transcription factor IIB (TFIIB), core domain {Pyrococcus woesei [TaxId: 2262]}

SCOPe Domain Coordinates for d1d3ub1:

Click to download the PDB-style file with coordinates for d1d3ub1.
(The format of our PDB-style files is described here.)

Timeline for d1d3ub1:

View in 3D
Domains from same chain:
(mouse over for more information)