SCOPe 2.07: Domain d3nava1: 3nav A:1-268

Lineage for d3nava1 (3nav A:1-268)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.2: Ribulose-phoshate binding barrel [51366] (7 families)

5. Family c.1.2.4: Tryptophan biosynthesis enzymes [51381] (4 proteins)

6. Protein automated matches [190053] (10 species)
   not a true protein

7. Species Vibrio cholerae [TaxId:243277] [189383] (1 PDB entry)

8. Domain d3nava1: 3nav A:1-268 [182120]
   Other proteins in same PDB: d3nava2, d3navb2
   automated match to d1bksa_
   complexed with edo

Details for d3nava1

PDB Entry: 3nav, 2.1 Å

PDB Description: Crystal structure of an alpha subunit of tryptophan synthase from Vibrio cholerae O1 biovar El Tor str. N16961

PDB Compounds: (A:) tryptophan synthase alpha chain

SCOPe Domain Sequences for d3nava1:

Sequence, based on SEQRES records:

>d3nava1 c.1.2.4 (A:1-268) automated matches {Vibrio cholerae [TaxId: 243277]}
mnryqalfqrlsaaqqgafvpfvtigdpnpeqslaimqtlidagadalelgmpfsdplad
gptiqganlralaakttpdicfeliaqirarnpetpigllmyanlvyargiddfyqrcqk
agvdsvliadvptnesqpfvaaaekfgiqpifiapptasdetlravaqlgkgytyllsra
gvtgaetkanmpvhallerlqqfdappallgfgisepaqvkqaieagaagaisgsavvki
iethldnpakqltelanftqamkkatki

Sequence, based on observed residues (ATOM records):

>d3nava1 c.1.2.4 (A:1-268) automated matches {Vibrio cholerae [TaxId: 243277]}
mnryqalfqrlsaaqqgafvpfvtigdpnpeqslaimqtlidagadalelgmpfsdplad
gptiqganlralaakttpdicfeliaqirarnpetpigllmyanlvyargiddfyqrcqk
agvdsvliadvptnesqpfvaaaekfgiqpifiapptasdetlravaqlgkgytyllsra
anmpvhallerlqqfdappallgfgisepaqvkqaieagaagaisgsavvkiiethldnp
akqltelanftqamkkatki

Timeline for d3nava1:

• d3nava1 first appeared in SCOPe 2.01, called d3nava_
  
• d3nava1 appears in SCOPe 2.06
  
• d3nava1 appears in the current release, SCOPe 2.08