SCOPe 2.06: Domain d3dqqb_: 3dqq B:

Lineage for d3dqqb_ (3dqq B:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.146: YgbK-like [142763] (1 superfamily)
   consists of two domains with partial topological similarity to the P-loop kinases but without the P-loop motif; the domain association results in the formation of a single mixed beta-sheet of 15 strands

4. Superfamily c.146.1: YgbK-like [142764] (2 families)

5. Family c.146.1.1: YgbK-like [142765] (2 proteins)
   Pfam PF07005; DUF1537; the B-fam model-covered region is non-compact in structure and distributed between the two domains

6. Protein automated matches [190941] (1 species)
   not a true protein

7. Species Salmonella typhimurium [TaxId:90371] [188501] (1 PDB entry)

8. Domain d3dqqb_: 3dqq B: [174186]
   Other proteins in same PDB: d3dqqa2
   automated match to d1yzya1

Details for d3dqqb_

PDB Entry: 3dqq, 2.7 Å

PDB Description: The crystal structure of the putative tRNA synthase from Salmonella typhimurium LT2

PDB Compounds: (B:) Putative tRNA synthase

SCOPe Domain Sequences for d3dqqb_:

Sequence, based on SEQRES records:

>d3dqqb_ c.146.1.1 (B:) automated matches {Salmonella typhimurium [TaxId: 90371]}
mlkigviaddftgatdiasflvengmptvqindvptgtqpegcdavvislktrscpaqea
ikqslaalvwlkkqgcqqvyfkycstfdstaegnigpvtdalmvaldtsftvispalpvn
grtvyqgylfvmnhllaesgmrhhpinpmtdsylprlmeaqaqgrcgvipaqtldegvaa
traalsrlqqegyryavldalnerhleiqgevlrdaplvtggsglamglarqwakhgvsq
arsagyplsgravvlsgscsqmtnqqvafyrqhaptrdvdvarclssetreayaealaqw
vlsqdselapmisatastqalaaiqqqygateashavealfsllaarlaeggitrfivag
getsgvvtqslgitgfhigpcispgvpwvnalhapvslalksgnfgdesffiraqrefq

Sequence, based on observed residues (ATOM records):

>d3dqqb_ c.146.1.1 (B:) automated matches {Salmonella typhimurium [TaxId: 90371]}
mlkigviaddftgatdiasflvengmptvqindvptgtqpegcdavvislktrscpaqea
ikqslaalvwlkkqgcqqvyfkycstfdstaegnigpvtdalmvaldtsftvispalpvn
grtvyqgylfvmnhllaesgmrhhpinpmtdsylprlmeaqaqgrcgvipaqtldegvaa
traalsrlqqegyryavldalnerhleiqgevlrdaplvtggsglamglarqwaksagyp
lsgravvlsgscsqmtnqqvafyrqhaptrdvdvarclssetreayaealaqwvlsqdse
lapmisatastqalaaiqqqygateashavealfsllaarlaeggitrfivaggetsgvv
tqslgitgfhigpcispgvpwvnalhapvslalksgnfgdesffiraqrefq

Timeline for d3dqqb_:

• d3dqqb_ first appeared in SCOPe 2.01
  
• d3dqqb_ appears in SCOPe 2.05
  
• d3dqqb_ appears in SCOPe 2.07
  
• d3dqqb_ appears in the current release, SCOPe 2.08