SCOPe 2.08: Domain d2yyub_: 2yyu B:

Lineage for d2yyub_ (2yyu B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.2: Ribulose-phoshate binding barrel [51366] (7 families)

5. Family c.1.2.3: Decarboxylase [51375] (4 proteins)

6. Protein automated matches [190130] (11 species)
   not a true protein

7. Species Geobacillus kaustophilus [TaxId:235909] [188260] (2 PDB entries)

8. Domain d2yyub_: 2yyu B: [170936]
   automated match to d1dbta_
   complexed with c5p

Details for d2yyub_

PDB Entry: 2yyu, 2.2 Å

PDB Description: Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus

PDB Compounds: (B:) orotidine 5'-phosphate decarboxylase

SCOPe Domain Sequences for d2yyub_:

Sequence, based on SEQRES records:

>d2yyub_ c.1.2.3 (B:) automated matches {Geobacillus kaustophilus [TaxId: 235909]}
htpfivaldfpskqeverflrpfagtplfvkvgmelyyqegpaivaflkeqghavfldlk
lhdipntvkqamkglarvgadlvnvhaaggrrmmeaaiegldagtpsgrmrprciavtql
tstdermlheelwisrplvetvahyaalakesgldgvvcsaneaafikercgasflavtp
girfaddaahdqvrvvtprkaralgsdyivigrsltraadplrtyarlqhewn

Sequence, based on observed residues (ATOM records):

>d2yyub_ c.1.2.3 (B:) automated matches {Geobacillus kaustophilus [TaxId: 235909]}
htpfivaldfpskqeverflrpfagtplfvkvgmelyyqegpaivaflkeqghavfldlk
lhdipntvkqamkglarvgadlvnvhaaggrrmmeaaiegldagtpsgrmrprciavtql
tstdermlheelwisrplvetvahyaalakesgldgvvcsaneaafikercgasflavtp
girfaddaarvvtprkaralgsdyivigrsltraadplrtyarlqhewn

Timeline for d2yyub_:

• d2yyub_ first appeared in SCOPe 2.01
  
• d2yyub_ appears in SCOPe 2.07